RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA169559 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6742522 6742522 PRJNA169559_P_NODE_1086_length_1558_cov_5.109876_g575_i0 PRJNA169559 1086 1558 5.109876 79.61186808 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.045   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g575 i0 100 0.0186136071887035 29 0 2 0 1240 1268 3575528 3575500 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11843450 11843450 PRJNA169559_P_NODE_13590_length_455_cov_2.077465_g11683_i0 PRJNA169559 13590 455 2.077465 9.45246575 Bradybaena similaris 145626 Mollusca Mollusca 63.9 2.04e-5   NTclustered gi|2912981848|dbj|AP039587.1| 145626 g11683 i0 93.023 0.0945054945054945 43 3 9 0 137 179 91386534 91386576 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 6, sequence blastn 43 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
20766676 20766676 PRJNA169559_P_NODE_46957_length_186_cov_2.522293_g44880_i0 PRJNA169559 46957 186 2.522293 4.69146498 Aplysia californica 6500 Mollusca Mollusca 52.8 0.016   NTclustered gi|1897936549|ref|XM_005106389.3| 6500 g44880 i0 100 0.150537634408602 28 0 15 0 136 163 3673 3646 PREDICTED: Aplysia californica RRP12-like protein (LOC101856684), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Aplysiida Aplysiidae Aplysia Aplysia californica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;