RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA169559 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
365158 365158 PRJNA169559_P_NODE_5861_length_701_cov_5.863095_g4449_i0 PRJNA169559 5861 701 5.863095 41.10029595 Polychytrium aggregatum 110093 Fungi Fungi 206 5.08e-48   NTclustered gi|2432162630|ref|XM_053112000.1| 110093 g4449 i0 76.733 22.6348074179743 404 72 56 16 226 621 523 134 Polychytrium aggregatum ribosomal protein L22/L17 (BJ171DRAFT_515986), mRNA blastn 15867 206 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
19491053 19491053 PRJNA169559_P_NODE_41736_length_230_cov_141.875622_g39659_i0 PRJNA169559 41736 230 141.875622 326.3139306 Fimicolochytrium sp. 2169592 Fungi Fungi 425 1.05e-114   NTclustered gi|1866582629|gb|MT730804.1| 2169592 g39659 i0 100 100.94347826087 230 0 100 0 1 230 4644 4415 Fimicolochytrium sp. isolate JEL0741 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23217 425 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium sp.
23317020 23317020 PRJNA169559_P_NODE_20339_length_368_cov_3.309735_g18296_i0 PRJNA169559 20339 368 3.309735 12.1798248 Polychytrium aggregatum 110093 Fungi Fungi 180 1.54e-40   NTclustered gi|2432132283|ref|XM_053107992.1| 110093 g18296 i0 77.564 21.0244565217391 312 60 83 9 62 368 524 218 Polychytrium aggregatum 13 kDa ribonucleoprotein-associated protein (BJ171DRAFT_438086), mRNA blastn 7737 180 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;