RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA169559" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA169559 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1639906 1639906 PRJNA169559_P_NODE_4562_length_793_cov_2.099476_g3297_i0 PRJNA169559 4562 793 2.099476 16.64884468 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 56.5 0.006   NTclustered gi|551612603|ref|XM_005787267.1| 280463 g3297 i0 96.97 0.0416141235813367 33 1 4 0 18 50 183 151 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 33 56.5 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
8018367 8018367 PRJNA169559_P_NODE_30407_length_263_cov_1.952991_g28331_i0 PRJNA169559 30407 263 1.952991 5.13636633 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 69.4 2.38e-7   NTclustered gi|551544733|ref|XM_005760352.1| 280463 g28331 i0 97.5 1.31939163498099 40 1 15 0 1 40 411 450 Emiliania huxleyi CCMP1516 uracil phosphoribosyltransferase mRNA blastn 347 69.4 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
9293098 9293098 PRJNA169559_P_NODE_2688_length_1008_cov_8.106231_g1744_i0 PRJNA169559 2688 1008 8.106231 81.71080848 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 440 1.8699999999999994e-118   NTclustered gi|551555706|ref|XM_005764956.1| 280463 g1744 i0 76.143 15.8214285714286 897 181 88 27 20 901 1077 199 Emiliania huxleyi CCMP1516 mitochondrial carrier protein mRNA blastn 15948 440 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
22041468 22041468 PRJNA169559_P_NODE_14258_length_445_cov_2.504808_g12331_i0 PRJNA169559 14258 445 2.504808 11.1463956 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 159 2.47e-34   NTclustered gi|551586694|ref|XM_005778339.1| 280463 g12331 i0 77.586 41.9910112359551 290 48 64 15 149 431 1086 1365 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 18686 159 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;