RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA168635" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA168635 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15667461 15667461 PRJNA168635_P_NODE_33053_length_159_cov_3.336364_g32637_i0 PRJNA168635 33053 159 3.336364 5.30481876 Candidatus Nitronauta litoralis 2705533 Bacteria Bacteria 143 7.589999999999999e-30   NTclustered gi|1938439011|gb|CP048685.1| 2705533 g32637 i0 88.43 227.358490566038 121 10 74 3 40 157 3876379 3876498 MAG: Candidatus Nitronauta litoralis isolate EB chromosome, complete genome blastn 36150 143 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitronauta Candidatus Nitronauta litoralis
21455909 21455909 PRJNA168635_P_NODE_10577_length_253_cov_16.220588_g10162_i0 PRJNA168635 10577 253 16.220588 41.03808764 Pseudomonadati 3379134 Bacteria Bacteria 231 2.75e-56   NTclustered gi|118340518|gb|EF106972.1| 482920 g10162 i0 83.268 611.268774703557 257 37 100 6 1 253 37199 36945 Uncultured marine Nitrospinaceae bacterium clone EB080L20_F04, partial sequence blastn 154651 231 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   uncultured marine Nitrospinaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;