RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA168635" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA168635 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1054198 1054198 PRJNA168635_P_NODE_13641_length_219_cov_3.435294_g13225_i0 PRJNA168635 13641 219 3.435294 7.52329386 Gemmatimonas 173479 Bacteria Bacteria 388 1.3e-103   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g13225 i0 98.63 14.6027397260274 219 3 100 0 1 219 2076153 2075935 Gemmatimonas phototrophica strain AP64, complete genome blastn 3198 388 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
1054396 1054396 PRJNA168635_P_NODE_4381_length_402_cov_9.390935_g3979_i0 PRJNA168635 4381 402 9.390935 37.7515587 Gemmatimonas 173479 Bacteria Bacteria 667 0   NTclustered gi|470475286|ref|NR_076270.1| 173480 g3979 i0 99.189 513.597014925373 370 3 92 0 33 402 1157 788 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 206466 667 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
4191739 4191739 PRJNA168635_P_NODE_33284_length_158_cov_4.128440_g32868_i0 PRJNA168635 33284 158 4.12844 6.5229352 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 60.2 7.8e-5   NTclustered gi|2874253728|emb|OY969570.1| 412054 g32868 i0 85.965 1.80379746835443 57 6 35 2 59 114 171719 171774 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 285 60.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6157014 6157014 PRJNA168635_P_NODE_2625_length_509_cov_5.178261_g2239_i0 PRJNA168635 2625 509 5.178261 26.35734849 Gemmatimonas 173479 Bacteria Bacteria 754 0   NTclustered gi|470475286|ref|NR_076270.1| 173480 g2239 i0 93.491 329.730844793713 507 33 99 0 3 509 1903 1397 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 167833 754 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
6157155 6157155 PRJNA168635_P_NODE_9985_length_262_cov_10.788732_g9570_i0 PRJNA168635 9985 262 10.788732 28.26647784 Gemmatimonas 173479 Bacteria Bacteria 446 9.379999999999998e-121   NTclustered gi|470475286|ref|NR_076270.1| 173480 g9570 i0 97.328 39.8015267175573 262 7 100 0 1 262 2012 2273 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 10428 446 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
8017851 8017851 PRJNA168635_P_NODE_24667_length_170_cov_1.652893_g24251_i0 PRJNA168635 24667 170 1.652893 2.8099181 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 161 2.26e-35   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g24251 i0 84.302 33.0470588235294 172 19 99 4 1 168 1552647 1552814 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 5618 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
14393577 14393577 PRJNA168635_P_NODE_21472_length_178_cov_1.232558_g21056_i0 PRJNA168635 21472 178 1.232558 2.19395324 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 233 5.01e-57   NTclustered gi|2874253728|emb|OY969570.1| 412054 g21056 i0 90.556 186.837078651685 180 11 99 5 2 178 173223 173047 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 33257 233 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17631818 17631818 PRJNA168635_P_NODE_1494_length_649_cov_5.311667_g1157_i0 PRJNA168635 1494 649 5.311667 34.47271883 Gemmatimonas 173479 Bacteria Bacteria 1042 0   NTclustered gi|470475286|ref|NR_076270.1| 173480 g1157 i0 95.712 145.730354391371 653 18 100 8 1 649 850 204 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 94579 1042 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
18216210 18216210 PRJNA168635_P_NODE_23195_length_173_cov_2.717742_g22779_i0 PRJNA168635 23195 173 2.717742 4.70169366 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 224 2.91e-54   NTclustered gi|2874254107|emb|OY970192.1| 412054 g22779 i0 91.463 226.28323699422 164 12 94 2 2 164 1592074 1592236 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 39147 224 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;