RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA168635" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA168635 · 15 ✖

analysis 1

  • blastn · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
364636 364636 PRJNA168635_P_NODE_41_length_2031_cov_22.740666_g34_i0 PRJNA168635 41 2031 22.740666 461.86292646 Woronina pythii 1484336 SAR_Eukaryotes SAR_Eukaryotes 387 5.06e-102   NTclustered gi|1031965309|gb|KX011114.1| 1484336 g34 i0 80.344 26.2264894140817 524 92 26 11 513 1030 3618 3100 Woronina pythii isolate PD0236 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 53266 387 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Woronina Woronina pythii
1054281 1054281 PRJNA168635_P_NODE_20521_length_180_cov_5.977099_g20105_i0 PRJNA168635 20521 180 5.977099 10.7587782 Arachnula 498001 SAR_Eukaryotes SAR_Eukaryotes 250 5.04e-62   NTclustered gi|212674777|gb|EU853660.1| 536091 g20105 i0 92.179 86.2777777777778 179 11 99 3 1 178 575 399 Arachnula impatiens strain BaikalA155 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15530 250 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula impatiens
2329613 2329613 PRJNA168635_P_NODE_32942_length_159_cov_10.881818_g32526_i0 PRJNA168635 32942 159 10.881818 17.30209062 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 172 9.689999999999999e-39   NTclustered gi|475391924|emb|HE860056.1| 41456 g32526 i0 93.162 81.3081761006289 117 8 74 0 1 117 127 243 Polymyxa betae genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate 73Ren9 blastn 12928 172 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
8017744 8017744 PRJNA168635_P_NODE_17787_length_190_cov_2.567376_g17371_i0 PRJNA168635 17787 190 2.567376 4.8780144 Hyalodiscus sp. (in: eukaryotes) 2046764 SAR_Eukaryotes SAR_Eukaryotes 302 1.47e-77   NTclustered gi|1681073020|gb|MH973260.1| 2046764 g17371 i0 95.263 100.089473684211 190 9 100 0 1 190 184 373 Hyalodiscus sp. (in: Vampyrellida) clone 13046771 18S small subunit ribosomal RNA gene, partial sequence blastn 19017 302 1 Eukaryota Sar   Endomyxa   Vampyrellida Hyalodiscidae Hyalodiscus Hyalodiscus sp. (in: eukaryotes)
12532772 12532772 PRJNA168635_P_NODE_13490_length_220_cov_7.988304_g13074_i0 PRJNA168635 13490 220 7.988304 17.5742688 Plasmodiophoridae 37358 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.48e-13   NTclustered gi|15088524|gb|AF310902.1|AF310902 41456 g13074 i0 91.045 18.9136363636364 67 4 30 2 2 67 1 66 Polymyxa betae 18S small subunit ribosomal RNA gene, partial sequence blastn 4161 89.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
13118449 13118449 PRJNA168635_P_NODE_34491_length_154_cov_4.561905_g34075_i0 PRJNA168635 34491 154 4.561905 7.0253337 uncultured Plasmodiophora 1938450 SAR_Eukaryotes SAR_Eukaryotes 198 1.53e-46   NTclustered gi|1723854500|gb|MN323507.1| 1938450 g34075 i0 90.196 96.5844155844156 153 13 99 2 3 154 35 186 Uncultured Plasmodiophora clone OTU1441 small subunit ribosomal RNA gene, partial sequence blastn 14874 198 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae   uncultured Plasmodiophora
15667170 15667170 PRJNA168635_P_NODE_15173_length_206_cov_3.471338_g14757_i0 PRJNA168635 15173 206 3.471338 7.15095628 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 163 7.97e-36   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g14757 i0 84.118 155.364077669903 170 25 82 2 1 169 20026 20194 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 32005 163 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
15667219 15667219 PRJNA168635_P_NODE_17253_length_192_cov_6.706294_g16837_i0 PRJNA168635 17253 192 6.706294 12.87608448 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 217 5.54e-52   NTclustered gi|1031965310|gb|KX011115.1| 37360 g16837 i0 94.964 4.34895833333333 139 6 72 1 54 192 7899 7762 Plasmodiophora brassicae isolate AT 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 835 217 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
16356687 16356687 PRJNA168635_P_NODE_26653_length_167_cov_4.711864_g26237_i0 PRJNA168635 26653 167 4.711864 7.86881288 Vampyrellida 1367446 SAR_Eukaryotes SAR_Eukaryotes 303 3.5e-78   NTclustered gi|2452456618|gb|OQ591878.1| 3032651 g26237 i0 99.401 100.035928143713 167 1 100 0 1 167 731 897 Vampyrella closterii strain VC01 small subunit ribosomal RNA gene, partial sequence blastn 16706 303 1 Eukaryota Sar   Endomyxa   Vampyrellida Vampyrellidae Vampyrella Vampyrella closterii
19490237 19490237 PRJNA168635_P_NODE_12196_length_233_cov_16.739130_g11780_i0 PRJNA168635 12196 233 16.73913 39.0021729 uncultured Leptophrys 2108307 SAR_Eukaryotes SAR_Eukaryotes 394 3.01e-105   NTclustered gi|1746154085|gb|MN480833.1| 2108307 g11780 i0 97.436 101.793991416309 234 1 98 2 1 229 1317 1550 Uncultured Leptophrys clone em.91 small subunit ribosomal RNA gene, partial sequence blastn 23718 394 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae   uncultured Leptophrys
19490403 19490403 PRJNA168635_P_NODE_20236_length_181_cov_4.242424_g19820_i0 PRJNA168635 20236 181 4.242424 7.67878744 Leptophrys vorax 1108494 SAR_Eukaryotes SAR_Eukaryotes 289 1.08e-73   NTclustered gi|378735000|emb|HE609039.1| 1108494 g19820 i0 95.556 100.701657458564 180 8 99 0 1 180 1372 1551 Leptophrys vorax partial 18S rRNA gene, strain LV.04 blastn 18227 289 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Leptophrys Leptophrys vorax
20765908 20765908 PRJNA168635_P_NODE_15377_length_204_cov_7.980645_g14961_i0 PRJNA168635 15377 204 7.980645 16.2805158 Vampyrellidae sp. 2588357 SAR_Eukaryotes SAR_Eukaryotes 128 2.87e-25   NTclustered gi|2106138081|gb|OK381876.1| 2588357 g14961 i0 78.261 21.0490196078431 207 39 100 6 1 204 598 801 Vampyrellidae sp. isolate BOP1 small subunit ribosomal RNA gene, partial sequence blastn 4294 128 1 Eukaryota Sar   Endomyxa   Vampyrellida Vampyrellidae   Vampyrellidae sp.
22041402 22041402 PRJNA168635_P_NODE_9458_length_271_cov_5.306306_g9043_i0 PRJNA168635 9458 271 5.306306 14.38008926 Haplosporida sp. 2651821 SAR_Eukaryotes SAR_Eukaryotes 108 5.23e-19   NTclustered gi|1830680059|gb|MT334478.1| 2651821 g9043 i0 86.735 34.4022140221402 98 12 36 1 57 153 458 555 Haplosporida sp. isolate Water_P3Pool_Feb small subunit ribosomal RNA gene, partial sequence blastn 9323 108 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida     Haplosporida sp.
22731008 22731008 PRJNA168635_P_NODE_2018_length_569_cov_31.842308_g1652_i0 PRJNA168635 2018 569 31.842308 181.18273252 Vampyrellida 1367446 SAR_Eukaryotes SAR_Eukaryotes 440 1.03e-118   NTclustered gi|2452456618|gb|OQ591878.1| 3032651 g1652 i0 81.142 99.8066783831283 578 83 100 19 1 569 523 1083 Vampyrella closterii strain VC01 small subunit ribosomal RNA gene, partial sequence blastn 56790 440 1 Eukaryota Sar   Endomyxa   Vampyrellida Vampyrellidae Vampyrella Vampyrella closterii
25280187 25280187 PRJNA168635_P_NODE_12300_length_232_cov_4.508197_g11884_i0 PRJNA168635 12300 232 4.508197 10.45901704 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 324 3.98e-84   NTclustered gi|30141003|dbj|AB094974.1| 37360 g11884 i0 92.174 84.4008620689655 230 16 99 2 1 230 65 292 Plasmodiophora brassicae gene for 18S rRNA, partial sequence, isolate: Sak3 blastn 19581 324 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;