RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1264536 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11842578 11842578 PRJNA1264536_P_NODE_4830_length_248_cov_1.337143_g4756_i0 PRJNA1264536 4830 248 1.337143 3.31611464 Strongyloides papillosus 174720 Nematoda Nematoda 318 1.9999999999999996e-82   NTclustered gi|690018478|emb|LM525716.1| 174720 g4756 i0 89.879 98.9637096774194 247 25 99 0 1 247 60147 60393 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000112 blastn 24543 318 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16941190 16941190 PRJNA1264536_P_NODE_5314_length_244_cov_0.912281_g5240_i0 PRJNA1264536 5314 244 0.912281 2.22596564 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.022   NTclustered gi|2445383759|ref|XM_053732915.1| 31234 g5240 i0 100 0.229508196721311 28 0 11 0 173 200 630 657 Caenorhabditis remanei uncharacterized protein (GCK72_019189), partial mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
19489945 19489945 PRJNA1264536_P_NODE_4516_length_251_cov_1.752809_g4442_i0 PRJNA1264536 4516 251 1.752809 4.39955059 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 453 5.34e-123   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g4442 i0 99.203 55.6294820717131 251 2 100 0 1 251 2624 2874 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 13963 453 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;