RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1264536 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2914581 2914581 PRJNA1264536_P_NODE_223_length_1154_cov_23.558742_g186_i0 PRJNA1264536 223 1154 23.558742 271.86788268 Amplirhagada cf. alkuonides WAM S37656 1580562 Mollusca Mollusca 71.3 3.25e-7   NTclustered gi|730451398|gb|KP085045.1| 1580562 g186 i0 74.731 0.161178509532062 186 34 16 10 557 737 324 501 Amplirhagada cf. alkuonides WAM S37656 clone a 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 186 71.3 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Amplirhagada Amplirhagada cf. alkuonides WAM S37656
8017272 8017272 PRJNA1264536_P_NODE_3767_length_281_cov_1.096154_g3693_i0 PRJNA1264536 3767 281 1.096154 3.08019274 Mya arenaria 6604 Mollusca Mollusca 54.7 0.007   NTclustered gi|2427467042|ref|XM_052939866.1| 6604 g3693 i0 100 0.206405693950178 29 0 10 0 92 120 938 966 PREDICTED: Mya arenaria cell division control protein 42 homolog (LOC128228518), transcript variant X1, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
14393037 14393037 PRJNA1264536_P_NODE_1492_length_472_cov_1.438596_g1418_i0 PRJNA1264536 1492 472 1.438596 6.79017312 Physella acuta 109671 Mollusca Mollusca 52.8 0.046   NTclustered gi|2572411827|ref|XM_059320587.1| 109671 g1418 i0 96.774 0.0656779661016949 31 1 7 0 169 199 2135 2165 PREDICTED: Physella acuta uncharacterized LOC131956164 (LOC131956164), mRNA blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
16356454 16356454 PRJNA1264536_P_NODE_4273_length_255_cov_1.978022_g4199_i0 PRJNA1264536 4273 255 1.978022 5.0439561 Corbicula 45948 Mollusca Mollusca 466 6.98e-127   NTclustered gi|8489067|gb|AF152024.1| 45949 g4199 i0 100 98.5254901960784 252 0 99 0 1 252 96 347 Corbicula fluminea 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 25124 466 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Cyrenidae Corbicula Corbicula fluminea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;