RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1264536 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8017293 8017293 PRJNA1264536_P_NODE_4887_length_248_cov_0.891429_g4813_i0 PRJNA1264536 4887 248 0.891429 2.21074392 Aquirufa lenticrescens 2696560 Bacteria Bacteria 337 5.53e-88   NTclustered gi|2091518249|gb|CP049834.1| 2696560 g4813 i0 91.429 1.97983870967742 245 21 99 0 2 246 758984 758740 Aquirufa lenticrescens strain 9H-EGSE chromosome, complete genome blastn 491 337 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Aquirufa Aquirufa lenticrescens
11257338 11257338 PRJNA1264536_P_NODE_4449_length_252_cov_0.871508_g4375_i0 PRJNA1264536 4449 252 0.871508 2.19620016 root 1 Root_unresolved Root_unresolved 460 3.2e-125   NTclustered gi|2625468065|gb|CP139161.1| 817 g4375 i0 99.603 71.5833333333333 252 1 100 0 1 252 2622048 2622299 Bacteroides fragilis strain ZY0804 chromosome, complete genome blastn 18039 460 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis
20180109 20180109 PRJNA1264536_P_NODE_5276_length_244_cov_0.912281_g5202_i0 PRJNA1264536 5276 244 0.912281 2.22596564 Odoribacter 283168 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1231719245|emb|LT906459.1| 28118 g5202 i0 100 3 244 0 100 0 1 244 1541327 1541570 Odoribacter splanchnicus strain NCTC10825 genome assembly, chromosome: 1 blastn 732 451 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Odoribacteraceae Odoribacter Odoribacter splanchnicus
22040590 22040590 PRJNA1264536_P_NODE_5038_length_247_cov_0.885057_g4964_i0 PRJNA1264536 5038 247 0.885057 2.18609079 Myroides odoratimimus 76832 Bacteria Bacteria 451 1.88e-122   NTclustered gi|2868334726|gb|CP121791.1| 76832 g4964 i0 99.595 8 247 1 100 0 1 247 44289 44535 Myroides odoratimimus strain pgdne chromosome blastn 1976 451 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;