RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1264536 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6156785 6156785 PRJNA1264536_P_NODE_2625_length_347_cov_1.138686_g2551_i0 PRJNA1264536 2625 347 1.138686 3.95124042 Cutibacterium 1912216 Bacteria Bacteria 641 1.5299999999999996e-179   NTclustered gi|1446500593|gb|CP031442.1| 1747 g2551 i0 100 271.881844380403 347 0 100 0 1 347 57055 56709 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 94343 641 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
16941184 16941184 PRJNA1264536_P_NODE_4974_length_247_cov_0.896552_g4900_i0 PRJNA1264536 4974 247 0.896552 2.21448344 Kitasatospora aureofaciens 1894 Bacteria Bacteria 446 8.759999999999998e-121   NTclustered gi|1175678048|gb|CP020567.1| 1894 g4900 i0 99.19 27.6842105263158 247 2 100 0 1 247 1300372 1300126 Kitasatospora aureofaciens strain DM-1, complete genome blastn 6838 446 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora aureofaciens
20180107 20180107 PRJNA1264536_P_NODE_4876_length_248_cov_0.891429_g4802_i0 PRJNA1264536 4876 248 0.891429 2.21074392 Brevibacterium 1696 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|1013855561|gb|CP014869.1| 1703 g4802 i0 99.597 371.758064516129 248 1 100 0 1 248 831242 831489 Brevibacterium linens strain BS258 chromosome, complete genome blastn 92196 453 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium linens
24590195 24590195 PRJNA1264536_P_NODE_4340_length_253_cov_0.866667_g4266_i0 PRJNA1264536 4340 253 0.866667 2.19266751 Actinocatenispora sera 390989 Bacteria Bacteria 300 7.43e-77   NTclustered gi|2020954569|dbj|AP023354.1| 390989 g4266 i0 88.664 1.97233201581028 247 26 97 2 4 249 2534309 2534064 Actinocatenispora sera NBRC 101916 DNA, complete genome blastn 499 300 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinocatenispora Actinocatenispora sera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;