RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 5 ✖

bioproject 1

  • PRJNA1264536 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
363900 363900 PRJNA1264536_P_NODE_5021_length_247_cov_0.896552_g4947_i0 PRJNA1264536 5021 247 0.896552 2.21448344 Zebrafish picornavirus 1 2304617 Viruses Viruses 433 6.82e-117   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g4947 i0 98.374 2.98785425101215 246 4 99 0 2 247 6003 5758 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 738 433 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
1638767 1638767 PRJNA1264536_P_NODE_4482_length_252_cov_0.871508_g4408_i0 PRJNA1264536 4482 252 0.871508 2.19620016 brine shrimp yue-like virus 3 2900455 Viruses Viruses 453 5.36e-123   NTclustered gi|2209094277|gb|OL472813.1| 2900455 g4408 i0 99.203 0.996031746031746 251 2 99 0 1 251 120 370 MAG: Brine shrimp yue-like virus 3 isolate 01/QH/92-02 segment 2 hypothetical protein gene, complete cds blastn 251 453 1 Viruses   Orthornavirae Negarnaviricota Yunchangviricetes Goujianvirales Yueviridae   brine shrimp yue-like virus 3
13117730 13117730 PRJNA1264536_P_NODE_3911_length_274_cov_1.034826_g3837_i0 PRJNA1264536 3911 274 1.034826 2.83542324 brine shrimp yue-like virus 3 2900455 Viruses Viruses 496 9.67e-136   NTclustered gi|2209095234|gb|OL472819.1| 2900455 g3837 i0 99.27 10.9233576642336 274 2 100 0 1 274 193 466 MAG: Brine shrimp yue-like virus 3 isolate SH/98 segment 2 hypothetical protein gene, complete cds blastn 2993 496 1 Viruses   Orthornavirae Negarnaviricota Yunchangviricetes Goujianvirales Yueviridae   brine shrimp yue-like virus 3
18215641 18215641 PRJNA1264536_P_NODE_4215_length_258_cov_1.264865_g4141_i0 PRJNA1264536 4215 258 1.264865 3.2633517 Zebrafish picornavirus 1 2304617 Viruses Viruses 394 3.39e-105   NTclustered gi|1812398529|gb|MN524064.1| 2304617 g4141 i0 94.186 2.86046511627907 258 15 100 0 1 258 5182 4925 Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome blastn 738 394 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1
23316036 23316036 PRJNA1264536_P_NODE_2239_length_378_cov_0.973770_g2165_i0 PRJNA1264536 2239 378 0.97377 3.6808506 Zebrafish picornavirus 1 2304617 Viruses Viruses 649 0   NTclustered gi|2500378199|ref|NC_076245.1| 2304617 g2165 i0 98.118 2.97354497354497 372 7 98 0 5 376 7639 8010 Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome blastn 1124 649 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;