RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1264536 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
363888 363888 PRJNA1264536_P_NODE_4341_length_253_cov_0.866667_g4267_i0 PRJNA1264536 4341 253 0.866667 2.19266751 Fusobacterium mortiferum 850 Bacteria Bacteria 115 2.89e-21   NTclustered gi|1370540179|gb|CP028102.1| 469616 g4267 i0 77.835 1.38339920948617 194 38 76 5 60 252 822299 822488 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 350 115 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
5467229 5467229 PRJNA1264536_P_NODE_2905_length_329_cov_1.410156_g2831_i0 PRJNA1264536 2905 329 1.410156 4.63941324 Cetobacterium somerae 188913 Bacteria Bacteria 372 2.09e-98   NTclustered gi|2865366169|gb|CP122292.1| 188913 g2831 i0 87.156 4.96352583586626 327 42 99 0 1 327 1713912 1713586 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 1633 372 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
16941181 16941181 PRJNA1264536_P_NODE_4834_length_248_cov_0.960000_g4760_i0 PRJNA1264536 4834 248 0.96 2.3808 Cetobacterium somerae 188913 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2201062197|gb|CP092519.1| 188913 g4760 i0 99.597 5 248 1 100 0 1 248 1722964 1723211 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 1240 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;