RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1264536" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1264536 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1638784 1638784 PRJNA1264536_P_NODE_5522_length_242_cov_0.923077_g5448_i0 PRJNA1264536 5522 242 0.923077 2.23384634 Chlamydomonas reinhardtii 3055 Plants Plants 442 1.1099999999999995e-119   NTclustered gi|2082239751|ref|XM_001699694.2| 3055 g5448 i0 99.587 1 242 1 100 0 1 242 926 685 Chlamydomonas reinhardtii ribosomal protein S19 (CHLRE_02g106600v5), mRNA blastn 242 442 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
20765505 20765505 PRJNA1264536_P_NODE_5457_length_242_cov_1.189349_g5383_i0 PRJNA1264536 5457 242 1.189349 2.87822458 Chlamydomonas reinhardtii 3055 Plants Plants 424 4.01e-114   NTclustered gi|2082238428|ref|XM_043059267.1| 3055 g5383 i0 98.347 1.84297520661157 242 3 100 1 1 242 748 988 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g082750v5), mRNA blastn 446 424 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
22040592 22040592 PRJNA1264536_P_NODE_5118_length_246_cov_0.901734_g5044_i0 PRJNA1264536 5118 246 0.901734 2.21826564 Chlamydomonas reinhardtii 3055 Plants Plants 453 5.2100000000000006e-123   NTclustered gi|2082267250|ref|XM_043070997.1| 3055 g5044 i0 100 0.995934959349594 245 0 99 0 1 245 1358 1602 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g661638v5), mRNA blastn 245 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;