RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1263632" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA1263632 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16941048 16941048 PRJNA1263632_P_NODE_7274_length_246_cov_3.323699_g7256_i0 PRJNA1263632 7274 246 3.323699 8.17629954 Clandestinovirus 2831644 Viruses Viruses 87.9 6.09e-13   NTclustered gi|2072965616|gb|MZ420154.1| 2831644 g7256 i0 87.838 6.99186991869919 74 9 30 0 67 140 478920 478847 Clandestinovirus isolate 347.936635, partial genome blastn 1720 87.9 1 Viruses               Clandestinovirus
22040459 22040459 PRJNA1263632_P_NODE_7078_length_248_cov_0.880000_g7060_i0 PRJNA1263632 7078 248 0.88 2.1824 Alphapapillomavirus 7 337042 Viruses Viruses 453 5.2600000000000005e-123   NTclustered gi|1258167441|gb|MF288668.1| 333761 g7060 i0 99.597 100 248 1 100 0 1 248 2492 2245 Human papillomavirus 18 isolate 1192983_N-P, complete genome blastn 24800 453 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;