RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1263632" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1263632 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
363731 363731 PRJNA1263632_P_NODE_6061_length_257_cov_1.728261_g6043_i0 PRJNA1263632 6061 257 1.728261 4.44163077 Dictyostelium purpureum 5786 Evosea other_Eukaryota 244 3.59e-60   NTclustered gi|330792727|ref|XM_003284391.1| 5786 g6043 i0 85.294 92.295719844358 238 34 93 1 5 242 307 71 Dictyostelium purpureum elongation factor 1 alpha (DICPUDRAFT_52946), mRNA blastn 23720 244 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
23315981 23315981 PRJNA1263632_P_NODE_8379_length_241_cov_0.916667_g8361_i0 PRJNA1263632 8379 241 0.916667 2.20916747 Heterostelium album 2086695 Evosea other_Eukaryota 285 1.96e-72   NTclustered gi|1160574132|ref|XM_020577244.1| 670386 g8361 i0 87.967 99.5643153526971 241 29 100 0 1 241 1003 763 Polysphondylium pallidum PN500 actin (act10), partial mRNA blastn 23995 285 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;