RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1263632" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1263632 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5466964 5466964 PRJNA1263632_P_NODE_1905_length_438_cov_7.073973_g1887_i0 PRJNA1263632 1905 438 7.073973 30.98400174 Ripella sp. 805 1217113 Discosea other_Eukaryota 695 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1887 i0 95.434 101.719178082192 438 16 100 2 1 438 998 565 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 44553 695 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
14392786 14392786 PRJNA1263632_P_NODE_1272_length_531_cov_1.351528_g1254_i0 PRJNA1263632 1272 531 1.351528 7.17661368 Vannella persistens 303303 Discosea other_Eukaryota 948 0   NTclustered gi|165968548|gb|EU377588.1| 303303 g1254 i0 98.87 90.6139359698682 531 6 100 0 1 531 559 29 Vannella persistens strain CRIB69 18S ribosomal RNA gene, partial sequence blastn 48116 948 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella persistens
15666627 15666627 PRJNA1263632_P_NODE_4873_length_285_cov_1.872642_g4855_i0 PRJNA1263632 4873 285 1.872642 5.3370297 Thecamoeba similis 242545 Discosea other_Eukaryota 322 1.82e-83   NTclustered gi|33946350|gb|AY294154.1| 242545 g4855 i0 88.39 83.8771929824561 267 31 94 0 19 285 25 291 Thecamoeba similis actin mRNA, complete cds blastn 23905 322 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
18215353 18215353 PRJNA1263632_P_NODE_1395_length_505_cov_1.722222_g1377_i0 PRJNA1263632 1395 505 1.722222 8.6972211 Ripella sp. 805 1217113 Discosea other_Eukaryota 776 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g1377 i0 94.499 100.889108910891 509 19 100 9 1 505 507 4 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 50949 776 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
18215565 18215565 PRJNA1263632_P_NODE_995_length_595_cov_2.867816_g977_i0 PRJNA1263632 995 595 2.867816 17.0635052 Ripella platypodia 2047821 Discosea other_Eukaryota 935 0   NTclustered gi|1269228354|gb|MF683479.1| 2047821 g977 i0 95.294 100.536134453782 595 18 99 6 3 595 1645 1059 Ripella platypodia clone 23.4.28 18S ribosomal RNA gene, partial sequence blastn 59819 935 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
24589987 24589987 PRJNA1263632_P_NODE_3300_length_338_cov_2.301887_g3282_i0 PRJNA1263632 3300 338 2.301887 7.78037806 Paravannella minima 1443144 Discosea other_Eukaryota 412 1.2699999999999999e-110   NTclustered gi|571331049|gb|KF895376.1| 1443144 g3282 i0 88.724 99.0532544378698 337 38 99 0 2 338 49 385 Paravannella minima strain CCAP 1533/1 clone 1 actin gene, partial cds blastn 33480 412 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;