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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1263632" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1263632 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1054091 1054091 PRJNA1263632_P_NODE_881_length_629_cov_0.827338_g864_i0 PRJNA1263632 881 629 0.827338 5.20395602 Chryseobacterium 59732 Bacteria Bacteria 928 0   NTclustered gi|399572481|gb|JQ918535.1| 152509 g864 i0 93.974 98.0524642289348 614 35 97 2 17 629 723 111 Uncultured Bacteroidetes bacterium clone Cd5d857 16S ribosomal RNA gene, partial sequence blastn 61675 933 0.994640943193998 Bacteria FCB group Pseudomonadati Bacteroidota         uncultured Bacteroidota bacterium
3604485 3604485 PRJNA1263632_P_NODE_643_length_718_cov_2.111628_g626_i0 PRJNA1263632 643 718 2.111628 15.16148904 Flavobacterium 237 Bacteria Bacteria 1101 0   NTclustered gi|2324023522|gb|CP109993.1| 2885633 g626 i0 94.908 339.300835654596 707 30 98 5 1 703 1333787 1334491 Flavobacterium sp. N1719 chromosome, complete genome blastn 243618 1101 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. N1719
6156769 6156769 PRJNA1263632_P_NODE_4045_length_309_cov_1.406780_g4027_i0 PRJNA1263632 4045 309 1.40678 4.3469502 Chryseobacterium 59732 Bacteria Bacteria 544 3.9e-150   NTclustered gi|1519580736|gb|CP033930.1| 253 g4027 i0 98.382 454.229773462783 309 5 100 0 1 309 2944291 2943983 Chryseobacterium indologenes strain H5559 chromosome, complete genome blastn 140357 549 0.990892531876138 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes
11257318 11257318 PRJNA1263632_P_NODE_3289_length_339_cov_1.308271_g3271_i0 PRJNA1263632 3289 339 1.308271 4.43503869 Flavobacterium 237 Bacteria Bacteria 556 5.56e-154   NTclustered gi|2223843353|gb|CP090145.1| 2024526 g3271 i0 96.188 680.802359882006 341 11 100 2 1 339 700950 701290 Flavobacterium sediminilitoris strain YSM-43 chromosome, complete genome blastn 230792 556 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sediminilitoris
16941032 16941032 PRJNA1263632_P_NODE_6614_length_250_cov_0.870056_g6596_i0 PRJNA1263632 6614 250 0.870056 2.17514 Flagellimonas ruestringensis 111501 Bacteria Bacteria 52.8 0.023   NTclustered gi|343953259|gb|CP002999.1| 886377 g6596 i0 100 0.112 28 0 11 0 220 247 3598249 3598222 Muricauda ruestringensis DSM 13258, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flagellimonas Flagellimonas ruestringensis
16941080 16941080 PRJNA1263632_P_NODE_8374_length_241_cov_0.916667_g8356_i0 PRJNA1263632 8374 241 0.916667 2.20916747 Sediminibacterium sp. TEGAF015 575378 Bacteria Bacteria 418 1.8599999999999995e-112   NTclustered gi|2285221741|dbj|AP026683.1| 575378 g8356 i0 97.925 139.54356846473 241 5 100 0 1 241 55587 55347 Sediminibacterium sp. TEGAF015 DNA, complete genome blastn 33630 418 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. TEGAF015

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;