RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1262902" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1262902 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5466905 5466905 PRJNA1262902_P_NODE_9405_length_247_cov_0.885057_g9363_i0 PRJNA1262902 9405 247 0.885057 2.18609079 Luteitalea pratensis 1855912 Bacteria Bacteria 270 5.659999999999999e-68   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g9363 i0 87.879 64.7935222672065 231 27 93 1 16 245 611669 611899 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 16004 270 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
24589872 24589872 PRJNA1262902_P_NODE_8640_length_248_cov_1.685714_g8598_i0 PRJNA1262902 8640 248 1.685714 4.18057072 Luteitalea sp. TBR-22 2802971 Bacteria Bacteria 333 7.149999999999999e-87   NTclustered gi|2131947417|dbj|AP024452.2| 2802971 g8598 i0 91.667 111.927419354839 240 20 99 0 9 248 4170644 4170405 Vicinamibacteria bacterium TBR-22 DNA, complete genome blastn 27758 333 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp. TBR-22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;