RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1262902" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1262902 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14392693 14392693 PRJNA1262902_P_NODE_12172_length_241_cov_0.916667_g12130_i0 PRJNA1262902 12172 241 0.916667 2.20916747 Leptotrichia alba 3239304 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|2785244533|gb|CP165647.1| 3239304 g12130 i0 100 4.01244813278008 241 0 100 0 1 241 553964 553724 Leptotrichia sp. HSP-536 chromosome, complete genome blastn 967 446 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia alba
14392753 14392753 PRJNA1262902_P_NODE_9332_length_247_cov_0.885057_g9290_i0 PRJNA1262902 9332 247 0.885057 2.18609079 Leptotrichia wadei 157687 Bacteria Bacteria 429 8.83e-116   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g9290 i0 97.976 2 247 5 100 0 1 247 2312713 2312959 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 494 429 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
22040244 22040244 PRJNA1262902_P_NODE_818_length_483_cov_2.251220_g776_i0 PRJNA1262902 818 483 2.25122 10.8733926 Leptotrichia hongkongensis 554406 Bacteria Bacteria 893 0   NTclustered gi|1708587163|dbj|AP019846.1| 554406 g776 i0 100 653.631469979296 483 0 100 0 1 483 71706 71224 Leptotrichia hongkongensis JMUB5056 DNA, complete genome blastn 315704 893 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hongkongensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;