RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1262902" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1262902 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1638335 1638335 PRJNA1262902_P_NODE_2822_length_322_cov_1.590361_g2780_i0 PRJNA1262902 2822 322 1.590361 5.12096242 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.03   NTclustered gi|1620137843|ref|XM_028678445.1| 85471 g2780 i0 100 0.0869565217391304 28 0 9 0 216 243 2365 2392 Plasmodium relictum conserved Plasmodium protein, unknown function (PRELSG_0105100), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
3604462 3604462 PRJNA1262902_P_NODE_4963_length_279_cov_1.495146_g4921_i0 PRJNA1262902 4963 279 1.495146 4.17145734 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|675194238|ref|XM_008907756.1| 761204 g4921 i0 100 0.200716845878136 28 0 10 0 240 267 406 433 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 56 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
4190649 4190649 PRJNA1262902_P_NODE_7864_length_250_cov_0.870056_g7822_i0 PRJNA1262902 7864 250 0.870056 2.17514 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 394 3.27e-105   NTclustered gi|820695469|tpe|LN714488.1| 572307 g7822 i0 95.2 48.484 250 11 100 1 1 250 116363 116611 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 12121 394 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;