RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1262902" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1262902 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1638353 1638353 PRJNA1262902_P_NODE_5202_length_276_cov_1.192118_g5160_i0 PRJNA1262902 5202 276 1.192118 3.29024568 uncultured Ruficoccus sp. 2175960 Bacteria Bacteria 52.8 0.025   NTclustered gi|2907625931|emb|OZ223491.1| 2175960 g5160 i0 91.892 0.134057971014493 37 3 13 0 213 249 76589 76553 MAG: uncultured Ruficoccus sp. isolate b2a3d85c-2e17-47e2-9e32-7ac6437316b9 genome assembly, chromosome: 20 blastn 37 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Ruficoccus uncultured Ruficoccus sp.
13117390 13117390 PRJNA1262902_P_NODE_5731_length_269_cov_1.178571_g5689_i0 PRJNA1262902 5731 269 1.178571 3.17035599 Aquisphaera giovannonii 406548 Bacteria Bacteria 414 2.73e-111   NTclustered gi|1730068067|gb|CP042997.1| 406548 g5689 i0 94.424 41.996282527881 269 15 100 0 1 269 5179024 5179292 Aquisphaera giovannonii strain OJF2 chromosome, complete genome blastn 11297 414 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Aquisphaera Aquisphaera giovannonii
15666405 15666405 PRJNA1262902_P_NODE_12153_length_241_cov_0.916667_g12111_i0 PRJNA1262902 12153 241 0.916667 2.20916747 Planctellipticum variicoloris 3064265 Bacteria Bacteria 54.7 0.006   NTclustered gi|2557458921|gb|CP130886.1| 3064265 g12111 i0 100 0.120331950207469 29 0 12 0 4 32 192988 192960 Planctellipticum variicoloris strain SH412 chromosome, complete genome blastn 29 54.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctellipticum Planctellipticum variicoloris
22730818 22730818 PRJNA1262902_P_NODE_5038_length_278_cov_1.429268_g4996_i0 PRJNA1262902 5038 278 1.429268 3.97336504 Engelhardtia 139931 Bacteria Bacteria 200 8.639999999999998e-47   NTclustered gi|1712638177|gb|CP036287.1| 2528011 g4996 i0 81.526 1.92805755395683 249 40 88 6 31 276 1570928 1571173 Planctomycetes bacterium Pla133 chromosome, complete genome blastn 536 200 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Engelhardtia Engelhardtia mirabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;