RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1255065" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1255065 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11838906 11838906 PRJNA1255065_P_NODE_39350_length_360_cov_1.527331_g37129_i0 PRJNA1255065 39350 360 1.527331 5.4983916 Anaeromyxobacter dehalogenans 161493 Bacteria Bacteria 228 5.279999999999998e-55   NTclustered gi|219952977|gb|CP001359.1| 455488 g37129 i0 78.963 3.7 347 63 94 8 22 360 4744921 4744577 Anaeromyxobacter dehalogenans 2CP-1 chromosome, complete genome blastn 1332 228 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans
15662775 15662775 PRJNA1255065_P_NODE_117553_length_167_cov_0.881356_g115325_i0 PRJNA1255065 117553 167 0.881356 1.47186452 Polyangium aurulentum 2567896 Bacteria Bacteria 189 1.0199999999999999e-43   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g115325 i0 89.333 0.898203592814371 150 16 90 0 1 150 11622952 11623101 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 150 189 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
16937453 16937453 PRJNA1255065_P_NODE_147974_length_162_cov_1.380531_g145746_i0 PRJNA1255065 147974 162 1.380531 2.23646022 Labilithrix luteola 1391654 Bacteria Bacteria 200 4.549999999999998e-47   NTclustered gi|913610804|gb|CP012333.1| 1391654 g145746 i0 88.889 23.5185185185185 162 18 100 0 1 162 3942195 3942034 Labilithrix luteola strain DSM 27648, complete genome blastn 3810 200 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
20179543 20179543 PRJNA1255065_P_NODE_63036_length_237_cov_1.218085_g60808_i0 PRJNA1255065 63036 237 1.218085 2.88686145 Myxococcia 32015 Bacteria Bacteria 363 8.65e-96   NTclustered gi|913610804|gb|CP012333.1| 1391654 g60808 i0 94.142 201.679324894515 239 12 100 1 1 237 3942449 3942211 Labilithrix luteola strain DSM 27648, complete genome blastn 47798 363 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
23312000 23312000 PRJNA1255065_P_NODE_109159_length_169_cov_0.866667_g106931_i0 PRJNA1255065 109159 169 0.866667 1.46466723 Labilithrix luteola 1391654 Bacteria Bacteria 200 4.76e-47   NTclustered gi|913610804|gb|CP012333.1| 1391654 g106931 i0 88.095 7.48520710059172 168 20 99 0 1 168 955563 955396 Labilithrix luteola strain DSM 27648, complete genome blastn 1265 200 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
23312019 23312019 PRJNA1255065_P_NODE_111219_length_168_cov_0.873950_g108991_i0 PRJNA1255065 111219 168 0.87395 1.468236 Labilithrix luteola 1391654 Bacteria Bacteria 172 1.04e-38   NTclustered gi|913610804|gb|CP012333.1| 1391654 g108991 i0 87.417 1.06547619047619 151 17 89 2 2 151 831279 831428 Labilithrix luteola strain DSM 27648, complete genome blastn 179 172 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
24005341 24005341 PRJNA1255065_P_NODE_53319_length_273_cov_1.620536_g51092_i0 PRJNA1255065 53319 273 1.620536 4.42406328 Nannocystis 53 Bacteria Bacteria 307 4.8400000000000005e-79   NTclustered gi|2244669|emb|X87286.1| 54 g51092 i0 87.179 125.14652014652 273 32 99 3 3 273 12 283 N.exedens 23S rRNA gene blastn 34165 307 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;