RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1255065" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1255065 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2910686 2910686 PRJNA1255065_P_NODE_129843_length_165_cov_0.896552_g127615_i0 PRJNA1255065 129843 165 0.896552 1.4793108 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 178 2.18e-40   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g127615 i0 86.061 2.96363636363636 165 23 100 0 1 165 751091 750927 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 489 178 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
8014075 8014075 PRJNA1255065_P_NODE_85047_length_193_cov_1.048611_g82819_i0 PRJNA1255065 85047 193 1.048611 2.02381923 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 163 7.37e-36   NTclustered gi|2874253755|emb|OY969695.1| 412054 g82819 i0 82.143 37.0103626943005 196 30 100 5 1 193 318556 318363 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 7143 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13113626 13113626 PRJNA1255065_P_NODE_105111_length_169_cov_1.016667_g102883_i0 PRJNA1255065 105111 169 1.016667 1.71816723 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 213 6.12e-51   NTclustered gi|2874253789|emb|OY969773.1| 412054 g102883 i0 90.533 313.408284023669 169 5 100 6 1 169 421704 421547 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 52966 213 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14389114 14389114 PRJNA1255065_P_NODE_126832_length_166_cov_0.888889_g124604_i0 PRJNA1255065 126832 166 0.888889 1.47555574 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 185 1.3099999999999999e-42   NTclustered gi|2874253978|emb|OY970303.1| 412054 g124604 i0 87.898 4.42771084337349 157 19 95 0 1 157 858067 858223 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 735 185 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;