RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1255065" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1255065 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1635015 1635015 PRJNA1255065_P_NODE_155122_length_155_cov_5.160377_g152894_i0 PRJNA1255065 155122 155 5.160377 7.99858435 Dangeardia mamillata 2058143 Fungi Fungi 281 1.49e-71   NTclustered gi|1290271196|gb|MG605054.1| 2058143 g152894 i0 99.355 99.4258064516129 155 1 100 0 1 155 629 475 Dangeardia mamillata isolate SVdW-EUD2 small subunit ribosomal RNA gene, partial sequence blastn 15411 281 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Dangeardia Dangeardia mamillata
5463066 5463066 PRJNA1255065_P_NODE_10285_length_901_cov_3.721831_g8707_i0 PRJNA1255065 10285 901 3.721831 33.53369731 Chytridiales sp. 2011832 Fungi Fungi 363 3.7e-95   NTclustered gi|2468791101|gb|OQ702943.1| 2011832 g8707 i0 78.205 37.5260821309656 624 97 69 24 244 864 4441 3854 Chytridiales sp. isolate PSC290 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 33811 363 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp.
13807008 13807008 PRJNA1255065_P_NODE_89651_length_186_cov_2.218978_g87423_i0 PRJNA1255065 89651 186 2.218978 4.12729908 Spizellomycetales 34478 Fungi Fungi 243 8.79e-60   NTclustered gi|1866582797|gb|MT730972.1| 4816 g87423 i0 90.323 100.838709677419 186 17 100 1 1 186 4973 5157 Spizellomyces acuminatus isolate Sacum small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18756 243 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces acuminatus
22037350 22037350 PRJNA1255065_P_NODE_85958_length_191_cov_2.190141_g83730_i0 PRJNA1255065 85958 191 2.190141 4.18316931 Spizellomyces punctatus 109760 Fungi Fungi 268 1.4999999999999998e-67   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g83730 i0 95.294 66.0157068062827 170 6 88 2 24 191 4084 3915 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 12609 268 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;