RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1255065" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1255065 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9981624 9981624 PRJNA1255065_P_NODE_82868_length_196_cov_1.231293_g80640_i0 PRJNA1255065 82868 196 1.231293 2.41333428 Campylobacter 194 Bacteria Bacteria 335 1.5e-87   NTclustered gi|2305955962|gb|CP012549.1| 1660063 g80640 i0 97.449 233.051020408163 196 5 100 0 1 196 819705 819900 Campylobacter sp. RM16187, complete genome blastn 45678 335 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. RM16187
22036600 22036600 PRJNA1255065_P_NODE_121258_length_167_cov_0.881356_g119030_i0 PRJNA1255065 121258 167 0.881356 1.47186452 Campylobacter lari 201 Bacteria Bacteria 52.8 0.014   NTclustered gi|2878623141|gb|CP176598.1| 488545 g119030 i0 100 0.167664670658683 28 0 17 0 102 129 278815 278788 Campylobacter lari subsp. concheus strain RM19156 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari
24005177 24005177 PRJNA1255065_P_NODE_152379_length_162_cov_0.920354_g150151_i0 PRJNA1255065 152379 162 0.920354 1.49097348 Sulfurospirillum 57665 Bacteria Bacteria 300 4.36e-77   NTclustered gi|507148369|ref|NR_103172.1| 44674 g150151 i0 100 223.006172839506 162 0 100 0 1 162 1000 839 Sulfurospirillum barnesii strain SES-3 23S ribosomal RNA gene, complete sequence blastn 36127 300 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum barnesii
25279180 25279180 PRJNA1255065_P_NODE_126740_length_166_cov_0.888889_g124512_i0 PRJNA1255065 126740 166 0.888889 1.47555574 Sulfurospirillum 57665 Bacteria Bacteria 307 2.69e-79   NTclustered gi|757804895|dbj|AP014723.1| 1581011 g124512 i0 100 175.295180722892 166 0 100 0 1 166 1860665 1860830 Sulfurospirillum sp. UCH001 DNA, complete genome blastn 29099 307 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp. UCH001

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;