RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1255065" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1255065 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
360079 360079 PRJNA1255065_P_NODE_143841_length_163_cov_0.912281_g141613_i0 PRJNA1255065 143841 163 0.912281 1.48701803 Candidatus Nanosynbacter sp. BB002 3393757 Bacteria Bacteria 246 5.8099999999999995e-61   NTclustered gi|2692798772|gb|CP146064.1| 3393757 g141613 i0 93.865 2 163 10 100 0 1 163 200138 199976 Candidatus Nanosynbacter sp. BB002 chromosome, complete genome blastn 326 246 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. BB002
6738001 6738001 PRJNA1255065_P_NODE_152206_length_162_cov_0.920354_g149978_i0 PRJNA1255065 152206 162 0.920354 1.49097348 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 110 7.89e-20   NTclustered gi|2874253892|emb|OY970067.1| 991135 g149978 i0 82.787 3.12962962962963 122 21 75 0 34 155 1499766 1499887 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 507 110 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
14389020 14389020 PRJNA1255065_P_NODE_118452_length_167_cov_0.881356_g116224_i0 PRJNA1255065 118452 167 0.881356 1.47186452 Candidatus Minimicrobia vallesae 2841264 Bacteria Bacteria 281 1.64e-71   NTclustered gi|2052594292|gb|CP076459.1| 2841264 g116224 i0 97.006 8 167 5 100 0 1 167 160090 160256 Candidatus Minimicrobia vallesae isolate IHU2 chromosome, complete genome blastn 1336 281 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Minimicrobia Candidatus Minimicrobia vallesae
20761349 20761349 PRJNA1255065_P_NODE_107477_length_169_cov_0.866667_g105249_i0 PRJNA1255065 107477 169 0.866667 1.46466723 TM7 phylum sp. oral taxon 349 713051 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|2028829559|gb|CP072328.1| 713051 g105249 i0 100 1 169 0 100 0 1 169 636618 636450 TM7 phylum sp. oral taxon 349 strain PM007 chromosome, complete genome blastn 169 313 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         TM7 phylum sp. oral taxon 349

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;