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contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA1255065" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 19 ✖

bioproject 1

  • PRJNA1255065 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1053484 1053484 PRJNA1255065_P_NODE_63381_length_236_cov_1.112299_g61153_i0 PRJNA1255065 63381 236 1.112299 2.62502564 Vexillifera 218659 Root_unresolved Root_unresolved 185 1.9999999999999998e-42   NTclustered gi|221185864|gb|FJ577811.1| 590481 g61153 i0 81.743 29.0296610169492 241 27 100 14 1 236 1565 1337 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 6851 185 1 Eukaryota Amoebozoa             uncultured Amoebozoa
3603814 3603814 PRJNA1255065_P_NODE_50223_length_288_cov_5.615063_g47997_i0 PRJNA1255065 50223 288 5.615063 16.17138144 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 532 7.8e-147   NTclustered gi|300078496|gb|GU001158.1| 5778 g47997 i0 100 52.5972222222222 288 0 100 0 1 288 1235 948 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15148 532 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8013741 8013741 PRJNA1255065_P_NODE_31827_length_436_cov_7.351421_g29611_i0 PRJNA1255065 31827 436 7.351421 32.05219556 Ripella sp. PS2 1217116 Discosea other_Eukaryota 712 0   NTclustered gi|399764205|gb|JQ271716.1| 1217116 g29611 i0 96.136 100.688073394495 440 9 100 4 1 436 1003 568 Ripella sp. PS2 18S ribosomal RNA gene, partial sequence blastn 43900 712 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. PS2
8705774 8705774 PRJNA1255065_P_NODE_117007_length_167_cov_0.881356_g114779_i0 PRJNA1255065 117007 167 0.881356 1.47186452 Dermamoeba 242548 Discosea other_Eukaryota 132 1.7500000000000002e-26   NTclustered gi|33946341|gb|AY294148.1| 242549 g114779 i0 86.179 29.1676646706587 123 15 74 2 4 126 997 877 Dermamoeba algensis small subunit ribosomal RNA gene, partial sequence blastn 4871 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Dermamoeba Dermamoeba algensis
8705959 8705959 PRJNA1255065_P_NODE_155767_length_152_cov_5.291262_g153539_i0 PRJNA1255065 155767 152 5.291262 8.04271824 Ripella 1217112 Discosea other_Eukaryota 281 1.46e-71   NTclustered gi|1269228349|gb|MF683474.1| 2047821 g153539 i0 100 100.5 152 0 100 0 1 152 542 391 Ripella platypodia clone 23.4.22 18S ribosomal RNA gene, partial sequence blastn 15276 281 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
9288714 9288714 PRJNA1255065_P_NODE_67588_length_225_cov_1.170455_g65360_i0 PRJNA1255065 67588 225 1.170455 2.63352375 Schizoplasmodiopsis amoeboidea 435420 Evosea other_Eukaryota 416 6.159999999999998e-112   NTclustered gi|260909292|gb|FJ766478.1| 435420 g65360 i0 100 56.4266666666667 225 0 100 0 1 225 1531 1307 Schizoplasmodiopsis amoeboidea strain BG7A-12B piece G 18S ribosomal RNA gene, partial sequence blastn 12696 416 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis amoeboidea
11256536 11256536 PRJNA1255065_P_NODE_31009_length_446_cov_1.569270_g28796_i0 PRJNA1255065 31009 446 1.56927 6.9989442 Vermamoeba 1260114 Tubulinea other_Eukaryota 813 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g28796 i0 99.552 42.7780269058296 446 2 100 0 1 446 2402 2847 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19079 813 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11839205 11839205 PRJNA1255065_P_NODE_78590_length_203_cov_1.337662_g76362_i0 PRJNA1255065 78590 203 1.337662 2.71545386 Paramoeba perurans 437603 Discosea other_Eukaryota 294 2.66e-75   NTclustered gi|145386781|gb|EF216906.1| 437603 g76362 i0 92.754 95.7931034482759 207 10 100 4 1 203 1418 1213 Neoparamoeba perurans strain GD-D1/1 28S large subunit ribosomal RNA gene, partial sequence blastn 19446 294 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
11839220 11839220 PRJNA1255065_P_NODE_80490_length_200_cov_1.033113_g78262_i0 PRJNA1255065 80490 200 1.033113 2.066226 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 324 3.33e-84   NTclustered gi|292559443|ref|NC_013986.1| 5778 g78262 i0 95.98 1.995 199 8 99 0 1 199 26415 26613 Hartmannella vermiformis mitochondrion, complete genome blastn 399 324 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14389171 14389171 PRJNA1255065_P_NODE_133332_length_165_cov_0.896552_g131104_i0 PRJNA1255065 133332 165 0.896552 1.4793108 Polyschismium peyerimhoffii 2911783 Evosea other_Eukaryota 174 2.82e-39   NTclustered gi|2161226355|gb|MZ313553.1| 2911783 g131104 i0 86.061 2.00606060606061 165 19 100 3 1 165 11281 11441 Polyschismium peyerimhoffii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 331 174 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Polyschismium Polyschismium peyerimhoffii
15080788 15080788 PRJNA1255065_P_NODE_147432_length_162_cov_2.141593_g145204_i0 PRJNA1255065 147432 162 2.141593 3.46938066 Vermamoeba 1260114 Tubulinea other_Eukaryota 300 4.36e-77   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g145204 i0 100 100 162 0 100 0 1 162 278 117 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 16200 300 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16937749 16937749 PRJNA1255065_P_NODE_62934_length_237_cov_2.148936_g60706_i0 PRJNA1255065 62934 237 2.148936 5.09297832 Schizoplasmodiopsis amoeboidea 435420 Evosea other_Eukaryota 438 1.4e-118   NTclustered gi|260909292|gb|FJ766478.1| 435420 g60706 i0 100 85.1983122362869 237 0 100 0 1 237 738 974 Schizoplasmodiopsis amoeboidea strain BG7A-12B piece G 18S ribosomal RNA gene, partial sequence blastn 20192 438 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Schizoplasmodiopsis Schizoplasmodiopsis amoeboidea
17631180 17631180 PRJNA1255065_P_NODE_73094_length_213_cov_1.158537_g70866_i0 PRJNA1255065 73094 213 1.158537 2.46768381 Vannella 95228 Discosea other_Eukaryota 300 6.06e-77   NTclustered gi|399764226|gb|JQ271737.1| 1215641 g70866 i0 94.388 92.9342723004695 196 9 92 2 1 195 1037 843 Vannella sp. ELH6 18S ribosomal RNA gene, partial sequence blastn 19795 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ELH6
18904660 18904660 PRJNA1255065_P_NODE_143615_length_163_cov_0.912281_g141387_i0 PRJNA1255065 143615 163 0.912281 1.48701803 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 4.72e-27   NTclustered gi|85062629|gb|DQ340387.1| 142831 g141387 i0 87.179 76.0306748466258 117 15 72 0 12 128 15226 15110 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 12393 134 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
19486578 19486578 PRJNA1255065_P_NODE_71116_length_217_cov_1.238095_g68888_i0 PRJNA1255065 71116 217 1.238095 2.68666615 Soliformovum irregulare 435424 Evosea other_Eukaryota 147 8.549999999999999e-31   NTclustered gi|381139238|emb|HE655045.1| 435424 g68888 i0 87.597 5.70967741935484 129 13 59 3 90 217 335 209 Soliformovum irregulare partial 28S rRNA gene, strain ATCC 26826 blastn 1239 147 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
20761572 20761572 PRJNA1255065_P_NODE_129077_length_165_cov_0.896552_g126849_i0 PRJNA1255065 129077 165 0.896552 1.4793108 Acanthamoeba healyi 65661 Discosea other_Eukaryota 75 2.94e-9   NTclustered gi|28194604|gb|AF479548.1| 65661 g126849 i0 88.525 0.36969696969697 61 7 37 0 30 90 292 232 Acanthamoeba healyi strain CDC V013 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 61 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
20762033 20762033 PRJNA1255065_P_NODE_65337_length_230_cov_2.801105_g63109_i0 PRJNA1255065 65337 230 2.801105 6.4425415 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 398 2.2899999999999997e-106   NTclustered gi|861553759|gb|KP719186.1| 1678066 g63109 i0 97.835 69.6739130434783 231 3 100 2 1 230 147 376 Korotnevella jeppesenii strain A4DVDPB clone 4 small subunit ribosomal RNA gene, partial sequence blastn 16025 398 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
21454850 21454850 PRJNA1255065_P_NODE_115817_length_167_cov_2.237288_g113589_i0 PRJNA1255065 115817 167 2.237288 3.73627096 Ripella 1217112 Discosea other_Eukaryota 291 2.7299999999999993e-74   NTclustered gi|1269228355|gb|MF683480.1| 2047821 g113589 i0 98.204 100.125748502994 167 1 99 2 2 167 1143 1308 Ripella platypodia clone 23.4.29 18S ribosomal RNA gene, partial sequence blastn 16721 291 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
22037414 22037414 PRJNA1255065_P_NODE_95758_length_179_cov_1.192308_g93530_i0 PRJNA1255065 95758 179 1.192308 2.13423132 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 231 1.8100000000000002e-56   NTclustered gi|292559443|ref|NC_013986.1| 5778 g93530 i0 90.96 69.2793296089386 177 8 98 5 4 179 26997 27166 Hartmannella vermiformis mitochondrion, complete genome blastn 12401 231 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;