RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1253698" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1253698 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1052933 1052933 PRJNA1253698_S_NODE_8101_length_241_cov_3.020833_g7735_i0 PRJNA1253698 8101 241 3.020833 7.28020753 Trebouxiophyceae 75966 Plants Plants 435 1.84e-117   NTclustered gi|664680900|gb|KJ756841.1| 37433 g7735 i0 99.17 99.8713692946058 241 2 100 0 1 241 675 915 Stichococcus bacillaris strain CCAP 379/5 18S ribosomal RNA gene, partial sequence blastn 24069 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
2910316 2910316 PRJNA1253698_S_NODE_15423_length_180_cov_1.015267_g15057_i0 PRJNA1253698 15423 180 1.015267 1.8274806 Stichococcus bacillaris 37433 Plants Plants 298 1.78e-76   NTclustered gi|371782093|emb|HE610125.1| 37433 g15057 i0 98.235 20.3388888888889 170 3 94 0 2 171 7191 7022 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 3661 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
25278770 25278770 PRJNA1253698_S_NODE_11520_length_204_cov_1.645161_g11154_i0 PRJNA1253698 11520 204 1.645161 3.35612844 Trebouxiophyceae 75966 Plants Plants 355 1.21e-93   NTclustered gi|723456786|ref|NC_025525.1| 3171 g11154 i0 98.039 100.264705882353 204 4 100 0 1 204 4724 4521 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 20454 355 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;