contig_metadata
21 rows where analysis = "blastn", bioproject = "PRJNA1253698" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 359526 | 359526 | PRJNA1253698_S_NODE_12121_length_200_cov_1.026490_g11755_i0 | PRJNA1253698 | 12121 | 200 | 1.02649 | 2.05298 | Congregicoccus parvus | 3081749 | Bacteria | Bacteria | 368 | 1.52e-97 | NTclustered | gi|2599616993|dbj|AP028972.1| | 3081749 | g11755 | i0 | 100 | 119.575 | 199 | 0 | 99 | 0 | 2 | 200 | 1304862 | 1304664 | Opitutales bacterium ASA1 DNA, complete genome | blastn | 23915 | 368 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Alterococcaceae | Congregicoccus | Congregicoccus parvus | |
| 359580 | 359580 | PRJNA1253698_S_NODE_3241_length_388_cov_2.097345_g2876_i0 | PRJNA1253698 | 3241 | 388 | 2.097345 | 8.1376986 | Candidatus Protochlamydia naegleriophila | 389348 | Bacteria | Bacteria | 438 | 2.429999999999999e-118 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g2876 | i0 | 88.714 | 78.4072164948454 | 381 | 13 | 98 | 15 | 7 | 386 | 1250514 | 1250163 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 30422 | 438 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 1052810 | 1052810 | PRJNA1253698_S_NODE_22261_length_163_cov_1.359649_g21895_i0 | PRJNA1253698 | 22261 | 163 | 1.359649 | 2.21622787 | Planctomycetia | 203683 | Bacteria | Bacteria | 235 | 1.26e-57 | NTclustered | gi|1133581311|gb|CP019082.1| | 1387353 | g21895 | i0 | 93.21 | 42.8773006134969 | 162 | 8 | 99 | 2 | 3 | 163 | 122582 | 122741 | Paludisphaera borealis strain PX4 chromosome, complete genome | blastn | 6989 | 237 | 0.991561181434599 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Paludisphaera | Paludisphaera borealis | |
| 1634425 | 1634425 | PRJNA1253698_S_NODE_17802_length_169_cov_1.275000_g17436_i0 | PRJNA1253698 | 17802 | 169 | 1.275 | 2.15475 | Opitutus sp. VeGlc2 | 134634 | Bacteria | Bacteria | 272 | 9.95e-69 | NTclustered | gi|164510706|emb|AJ966885.1| | 134634 | g17436 | i0 | 95.833 | 15.0769230769231 | 168 | 7 | 99 | 0 | 1 | 168 | 2253 | 2420 | Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 | blastn | 2548 | 272 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. VeGlc2 | |
| 3603164 | 3603164 | PRJNA1253698_S_NODE_11943_length_201_cov_1.539474_g11577_i0 | PRJNA1253698 | 11943 | 201 | 1.539474 | 3.09434274 | Parachlamydia | 83551 | Bacteria | Bacteria | 311 | 2.61e-80 | NTclustered | gi|470491594|ref|NR_077046.1| | 83552 | g11577 | i0 | 94.949 | 114.248756218905 | 198 | 10 | 99 | 0 | 1 | 198 | 1106 | 909 | Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence | blastn | 22964 | 311 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydia | Parachlamydia acanthamoebae | |
| 5462970 | 5462970 | PRJNA1253698_S_NODE_12545_length_197_cov_0.871622_g12179_i0 | PRJNA1253698 | 12545 | 197 | 0.871622 | 1.71709534 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 246 | 7.29e-61 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g12179 | i0 | 96.622 | 190.060913705584 | 148 | 5 | 75 | 0 | 2 | 149 | 2002707 | 2002560 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 37442 | 246 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 8013109 | 8013109 | PRJNA1253698_S_NODE_21227_length_165_cov_0.887931_g20861_i0 | PRJNA1253698 | 21227 | 165 | 0.887931 | 1.46508615 | Bremerella volcania | 2527984 | Bacteria | Bacteria | 154 | 3.68e-33 | NTclustered | gi|1712647354|gb|CP036289.1| | 2527984 | g20861 | i0 | 87.313 | 154.357575757576 | 134 | 17 | 85 | 0 | 4 | 137 | 2674515 | 2674648 | Bremerella volcania strain Pan97 chromosome, complete genome | blastn | 25469 | 154 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Bremerella | Bremerella volcania | |
| 8013121 | 8013121 | PRJNA1253698_S_NODE_2707_length_433_cov_2.403646_g2343_i0 | PRJNA1253698 | 2707 | 433 | 2.403646 | 10.40778718 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 418 | 3.5799999999999995e-112 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g2343 | i0 | 84.439 | 162.15935334873 | 437 | 55 | 98 | 10 | 8 | 432 | 7050836 | 7050401 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 70215 | 418 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 9287890 | 9287890 | PRJNA1253698_S_NODE_4448_length_330_cov_1.217082_g4082_i0 | PRJNA1253698 | 4448 | 330 | 1.217082 | 4.0163706 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 453 | 7.29e-123 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g4082 | i0 | 91.541 | 138.981818181818 | 331 | 24 | 99 | 4 | 1 | 329 | 2061045 | 2060717 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 45864 | 453 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 9980877 | 9980877 | PRJNA1253698_S_NODE_4188_length_340_cov_3.302405_g3822_i0 | PRJNA1253698 | 4188 | 340 | 3.302405 | 11.228177 | Isosphaeraceae | 1763524 | Bacteria | Bacteria | 484 | 2.6699999999999994e-132 | NTclustered | gi|1730068067|gb|CP042997.1| | 406548 | g3822 | i0 | 92.353 | 173.144117647059 | 340 | 26 | 100 | 0 | 1 | 340 | 5180272 | 5180611 | Aquisphaera giovannonii strain OJF2 chromosome, complete genome | blastn | 58869 | 488 | 0.991803278688525 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Aquisphaera | Aquisphaera giovannonii | |
| 10563762 | 10563762 | PRJNA1253698_S_NODE_21109_length_165_cov_0.896552_g20743_i0 | PRJNA1253698 | 21109 | 165 | 0.896552 | 1.4793108 | Rosistilla ulvae | 1930277 | Bacteria | Bacteria | 169 | 1.31e-37 | NTclustered | gi|1712438206|gb|CP036261.1| | 1930277 | g20743 | i0 | 90.625 | 65.1757575757576 | 128 | 10 | 77 | 2 | 1 | 127 | 975932 | 976058 | Rosistilla ulvae strain EC9 chromosome | blastn | 10754 | 169 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Rosistilla | Rosistilla ulvae | |
| 11838277 | 11838277 | PRJNA1253698_S_NODE_17110_length_172_cov_1.186992_g16744_i0 | PRJNA1253698 | 17110 | 172 | 1.186992 | 2.04162624 | uncultured Chlamydiales bacterium | 174324 | Bacteria | Bacteria | 283 | 4.700000000000002e-72 | NTclustered | gi|880804243|gb|KT262987.1| | 174324 | g16744 | i0 | 97.024 | 91.5174418604651 | 168 | 5 | 98 | 0 | 2 | 169 | 168 | 1 | Uncultured Chlamydiales bacterium clone SW2A 16S ribosomal RNA gene, partial sequence | blastn | 15741 | 283 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Chlamydiales | uncultured Chlamydiales bacterium | |||
| 13113531 | 13113531 | PRJNA1253698_S_NODE_20751_length_165_cov_1.163793_g20385_i0 | PRJNA1253698 | 20751 | 165 | 1.163793 | 1.92025845 | Symmachiella dynata | 2527995 | Bacteria | Bacteria | 150 | 4.76e-32 | NTclustered | gi|1712609668|gb|CP036276.1| | 2527995 | g20385 | i0 | 85.034 | 60.5212121212121 | 147 | 22 | 89 | 0 | 4 | 150 | 1041607 | 1041461 | Symmachiella dynata strain Mal52 chromosome, complete genome | blastn | 9986 | 150 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | Symmachiella | Symmachiella dynata | |
| 14388814 | 14388814 | PRJNA1253698_S_NODE_6692_length_266_cov_0.875576_g6326_i0 | PRJNA1253698 | 6692 | 266 | 0.875576 | 2.32903216 | uncultured Planctomycetota bacterium | 120965 | Bacteria | Bacteria | 344 | 3.58e-90 | NTclustered | gi|576901465|gb|KF827058.1| | 120965 | g6326 | i0 | 90.299 | 39.6127819548872 | 268 | 19 | 99 | 7 | 2 | 266 | 306 | 43 | Uncultured planctomycete clone B-30-43 16S ribosomal RNA gene, partial sequence | blastn | 10537 | 344 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | uncultured Planctomycetota bacterium | |||||
| 15662553 | 15662553 | PRJNA1253698_S_NODE_18313_length_168_cov_1.949580_g17947_i0 | PRJNA1253698 | 18313 | 168 | 1.94958 | 3.2752944 | Neochlamydia hartmannellae | 112235 | Bacteria | Bacteria | 272 | 9.95e-69 | NTclustered | gi|219857449|ref|NR_025037.1| | 112235 | g17947 | i0 | 100 | 97.5952380952381 | 147 | 0 | 88 | 0 | 1 | 147 | 279 | 425 | Neochlamydia hartmannellae strain A1Hsp 16S ribosomal RNA, partial sequence | blastn | 16396 | 272 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Neochlamydia | Neochlamydia hartmannellae | |
| 19485668 | 19485668 | PRJNA1253698_S_NODE_17296_length_171_cov_1.262295_g16930_i0 | PRJNA1253698 | 17296 | 171 | 1.262295 | 2.15852445 | Opitutus sp. VeGlc2 | 134634 | Bacteria | Bacteria | 274 | 2.8099999999999996e-69 | NTclustered | gi|164510706|emb|AJ966885.1| | 134634 | g16930 | i0 | 95.858 | 168.654970760234 | 169 | 7 | 99 | 0 | 2 | 170 | 2681 | 2513 | Opitutus sp. VeGlc2 16S rRNA gene (partial), 23S rRNA gene, tRNA-Ala gene, tRNA-Ile gene, ITS1 and ITS2, strain DSM 11246 | blastn | 28840 | 274 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. VeGlc2 | |
| 19485740 | 19485740 | PRJNA1253698_S_NODE_9716_length_221_cov_1.087209_g9350_i0 | PRJNA1253698 | 9716 | 221 | 1.087209 | 2.40273189 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 298 | 2.28e-76 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g9350 | i0 | 90.991 | 108.995475113122 | 222 | 18 | 100 | 2 | 1 | 221 | 2060160 | 2060380 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 24088 | 298 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 20761213 | 20761213 | PRJNA1253698_S_NODE_14757_length_183_cov_1.604478_g14391_i0 | PRJNA1253698 | 14757 | 183 | 1.604478 | 2.93619474 | Waddlia malaysiensis | 219016 | Bacteria | Bacteria | 167 | 5.33e-37 | NTclustered | gi|27903501|gb|AY184804.1| | 219016 | g14391 | i0 | 83.616 | 135.415300546448 | 177 | 27 | 96 | 2 | 5 | 180 | 2073 | 2248 | Waddlia sp. G817 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 24781 | 167 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Waddliaceae | Waddlia | Waddlia malaysiensis | |
| 20761266 | 20761266 | PRJNA1253698_S_NODE_6717_length_265_cov_1.703704_g6351_i0 | PRJNA1253698 | 6717 | 265 | 1.703704 | 4.5148156 | Aquisphaera giovannonii | 406548 | Bacteria | Bacteria | 433 | 7.399999999999998e-117 | NTclustered | gi|1730068067|gb|CP042997.1| | 406548 | g6351 | i0 | 96.212 | 179.301886792453 | 264 | 10 | 99 | 0 | 2 | 265 | 5181004 | 5180741 | Aquisphaera giovannonii strain OJF2 chromosome, complete genome | blastn | 47515 | 433 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Aquisphaera | Aquisphaera giovannonii | |
| 22036321 | 22036321 | PRJNA1253698_S_NODE_19938_length_166_cov_1.307692_g19572_i0 | PRJNA1253698 | 19938 | 166 | 1.307692 | 2.17076872 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 202 | 1.2999999999999998e-47 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g19572 | i0 | 88.69 | 37.2289156626506 | 168 | 15 | 100 | 4 | 1 | 166 | 7050404 | 7050239 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 6180 | 202 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 24585978 | 24585978 | PRJNA1253698_S_NODE_4480_length_328_cov_2.369176_g4114_i0 | PRJNA1253698 | 4480 | 328 | 2.369176 | 7.77089728 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 370 | 7.5e-98 | NTclustered | gi|2874253749|emb|OY969623.1| | 1914239 | g4114 | i0 | 87.311 | 95.3993902439024 | 331 | 33 | 98 | 8 | 6 | 328 | 7051687 | 7051358 | MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 | blastn | 31291 | 370 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;