RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1253303" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1253303 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2327905 2327905 PRJNA1253303_P_NODE_4562_length_261_cov_1.622340_g4540_i0 PRJNA1253303 4562 261 1.62234 4.2343074 Polyangiales 3031712 Bacteria Bacteria 364 2.689999999999999e-96   NTclustered gi|1566495190|gb|CP012670.1| 56 g4540 i0 94.515 145.164750957854 237 12 91 1 2 238 2994843 2994608 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 37888 364 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
16936760 16936760 PRJNA1253303_P_NODE_6814_length_247_cov_0.896552_g6792_i0 PRJNA1253303 6814 247 0.896552 2.21448344 Stigmatella aurantiaca 41 Bacteria Bacteria 150 7.7e-32   NTclustered gi|309390350|gb|CP002271.1| 378806 g6792 i0 78.298 2.78947368421053 235 49 95 2 10 243 320639 320872 Stigmatella aurantiaca DW4/3-1, complete genome blastn 689 150 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;