RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1253303" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1253303 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7430504 7430504 PRJNA1253303_P_NODE_8566_length_238_cov_2.587879_g8544_i0 PRJNA1253303 8566 238 2.587879 6.15915202 Naegleria 5761 Heterolobosea other_Eukaryota 436 5.049999999999999e-118   NTclustered gi|2618963742|gb|OR769034.1| 5762 g8544 i0 100 28.7773109243697 236 0 99 0 1 236 3801 4036 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 6849 436 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15662258 15662258 PRJNA1253303_P_NODE_1053_length_477_cov_1.259901_g1031_i0 PRJNA1253303 1053 477 1.259901 6.00972777 Heterolobosea sp. BA 373143 Heterolobosea other_Eukaryota 462 1.81e-125   NTclustered gi|89148137|gb|DQ388522.1| 373143 g1031 i0 84.44 97.5786163522013 482 61 99 10 3 477 241 715 Heterolobosea sp. BA beta-tubulin gene, partial cds blastn 46545 462 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. BA
16936682 16936682 PRJNA1253303_P_NODE_3514_length_292_cov_1.178082_g3492_i0 PRJNA1253303 3514 292 1.178082 3.43999944 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 388 1.82e-103   NTclustered gi|290987763|ref|XM_002676546.1| 5762 g3492 i0 90.753 391.003424657534 292 26 100 1 1 292 320 30 Naegleria gruberi polyubiquitin (NAEGRDRAFT_55791), mRNA blastn 114173 388 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24585754 24585754 PRJNA1253303_P_NODE_4680_length_258_cov_1.610811_g4658_i0 PRJNA1253303 4680 258 1.610811 4.15589238 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 152 2.2499999999999995e-32   NTclustered gi|2124400853|ref|XM_044699456.1| 51637 g4658 i0 85.517 4.46899224806202 145 21 56 0 1 145 301 157 Naegleria lovaniensis uncharacterized protein (C9374_009286), partial mRNA blastn 1153 152 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;