RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "blastn", bioproject = "PRJNA1253303" and tax_kingdom = "Fungi"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA1253303 · 15 ✖

analysis 1

  • blastn · 15 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
359342 359342 PRJNA1253303_P_NODE_4601_length_260_cov_1.518717_g4579_i0 PRJNA1253303 4601 260 1.518717 3.9486642 Periconia cynodontis 2998216 Fungi Fungi 167 8.109999999999999e-37   NTclustered gi|2459743111|gb|OP961434.1| 2998216 g4579 i0 81.773 82.5346153846154 203 33 77 4 23 223 698 498 Periconia cynodontis isolate Lu4 translation elongation factor 1-alpha (TEF1) gene, partial cds blastn 21459 167 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Periconiaceae Periconia Periconia cynodontis
1052600 1052600 PRJNA1253303_P_NODE_4901_length_253_cov_0.950000_g4879_i0 PRJNA1253303 4901 253 0.95 2.4035 Pleosporales 92860 Fungi Fungi 462 8.95e-126   NTclustered gi|2791117515|gb|PQ217832.1| 5599 g4879 i0 99.605 120.786561264822 253 1 100 0 1 253 4376 4124 Alternaria alternata isolate Karbala-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence blastn 30559 462 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
2910104 2910104 PRJNA1253303_P_NODE_2723_length_322_cov_1.566265_g2701_i0 PRJNA1253303 2723 322 1.566265 5.0433733 Alternaria alternata 5599 Fungi Fungi 592 1.44e-164   NTclustered gi|2791117515|gb|PQ217832.1| 5599 g2701 i0 100 111.562111801242 320 0 99 0 1 320 5296 5615 Alternaria alternata isolate Karbala-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence blastn 35923 592 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
2910176 2910176 PRJNA1253303_P_NODE_5943_length_250_cov_0.881356_g5921_i0 PRJNA1253303 5943 250 0.881356 2.20339 Aspergillus versicolor 46472 Fungi Fungi 233 7.529999999999999e-57   NTclustered gi|2028128618|ref|XM_040805787.1| 1036611 g5921 i0 98.485 3.532 132 2 53 0 1 132 132 1 Aspergillus versicolor CBS 583.65 uncharacterized protein (ASPVEDRAFT_120326), partial mRNA blastn 883 233 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Aspergillus Aspergillus versicolor
3603064 3603064 PRJNA1253303_P_NODE_5143_length_253_cov_0.866667_g5121_i0 PRJNA1253303 5143 253 0.866667 2.19266751 Cladosporium 5498 Fungi Fungi 414 2.54e-111   NTclustered gi|1905450536|gb|MN657180.1| 1707700 g5121 i0 96.774 92.6679841897233 248 8 98 0 6 253 5430 5183 Cladosporium sp. strain YFCC8620 mitochondrion, complete genome blastn 23445 418 0.990430622009569 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium sp.
5462836 5462836 PRJNA1253303_P_NODE_7345_length_246_cov_0.901734_g7323_i0 PRJNA1253303 7345 246 0.901734 2.21826564 Cryptococcus amylolentus 104669 Fungi Fungi 178 3.5099999999999993e-40   NTclustered gi|1101782768|ref|XM_019134367.1| 1295533 g7323 i0 84.043 24.1585365853659 188 26 76 3 1 186 1518 1703 Cryptococcus amylolentus CBS 6039 ATP-dependent RNA helicase ded1 (L202_01067), mRNA blastn 5943 178 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus amylolentus
10563575 10563575 PRJNA1253303_P_NODE_6789_length_247_cov_0.896552_g6767_i0 PRJNA1253303 6789 247 0.896552 2.21448344 Calcarisporiella thermophila 911321 Fungi Fungi 102 2.19e-17   NTclustered gi|2837879392|ref|XM_069398379.1| 911321 g6767 i0 79.72 0.578947368421053 143 28 58 1 9 151 1113 1254 Calcarisporiella thermophila uncharacterized protein (VTP21DRAFT_7618), partial mRNA blastn 143 102 1 Eukaryota Opisthokonta Fungi Mucoromycota   Calcarisporiellales Calcarisporiellaceae Calcarisporiella Calcarisporiella thermophila
11255874 11255874 PRJNA1253303_P_NODE_1749_length_386_cov_2.696486_g1727_i0 PRJNA1253303 1749 386 2.696486 10.40843596 Ascomycota 4890 Fungi Fungi 713 0   NTclustered gi|1840379205|gb|MT453271.1| 5599 g1727 i0 100 100 386 0 100 0 1 386 951 566 Alternaria alternata isolate DSM100286_DF09_RLCS10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 38600 713 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
13806010 13806010 PRJNA1253303_P_NODE_8591_length_233_cov_2.068750_g8569_i0 PRJNA1253303 8591 233 2.06875 4.8201875 root 1 Root_unresolved Root_unresolved 431 2.2899999999999996e-116   NTclustered gi|1389182097|gb|CP029160.1| 4932 g8569 i0 100 37.7811158798283 233 0 100 0 1 233 7370209 7369977 Saccharomyces cerevisiae strain SY14 chromosome I, complete sequence blastn 8803 431 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
15080197 15080197 PRJNA1253303_P_NODE_7052_length_246_cov_1.404624_g7030_i0 PRJNA1253303 7052 246 1.404624 3.45537504 Fungi 4751 Fungi Fungi 453 5.2100000000000006e-123   NTclustered gi|2582615798|ref|XR_009468002.1| 5061 g7030 i0 100 105.573170731707 245 0 99 0 2 246 2639 2395 Aspergillus niger 28S ribosomal RNA (28S rRNA), partial rRNA blastn 25971 453 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Aspergillus Aspergillus niger
15662324 15662324 PRJNA1253303_P_NODE_4633_length_259_cov_1.612903_g4611_i0 PRJNA1253303 4633 259 1.612903 4.17741877 Scheffersomyces spartinae 45513 Fungi Fungi 145 3.78e-30   NTclustered gi|2083601550|ref|XM_043191991.1| 45513 g4611 i0 78.261 20.0810810810811 230 46 88 4 9 236 1177 1404 Scheffersomyces spartinae 70-kilodalton heat shock protein (HSP70_1), partial mRNA blastn 5201 145 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Scheffersomyces Scheffersomyces spartinae
16936709 16936709 PRJNA1253303_P_NODE_4754_length_256_cov_1.590164_g4732_i0 PRJNA1253303 4754 256 1.590164 4.07081984 Talaromyces stipitatus 28564 Fungi Fungi 222 1.68e-53   NTclustered gi|242768053|ref|XM_002341451.1| 441959 g4732 i0 87.629 33.28515625 194 20 75 4 37 228 30 221 Talaromyces stipitatus ATCC 10500 S-adenosylmethionine synthetase (TSTA_074840), partial mRNA blastn 8521 222 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Trichocomaceae Talaromyces Talaromyces stipitatus
18904069 18904069 PRJNA1253303_P_NODE_4255_length_269_cov_1.724490_g4233_i0 PRJNA1253303 4255 269 1.72449 4.6388781 Opisthokonta 33154 Fungi Fungi 497 2.63e-136   NTclustered gi|2791117515|gb|PQ217832.1| 5599 g4233 i0 100 113.970260223048 269 0 100 0 1 269 4941 4673 Alternaria alternata isolate Karbala-1 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and external transcribed spacer, partial sequence blastn 30658 497 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
19485523 19485523 PRJNA1253303_P_NODE_7456_length_245_cov_0.906977_g7434_i0 PRJNA1253303 7456 245 0.906977 2.22209365 Purpureocillium takamizusanense 2060973 Fungi Fungi 143 1.28e-29   NTclustered gi|2234652211|ref|XM_047983266.1| 2060973 g7434 i0 82.635 12.6408163265306 167 23 67 5 6 169 1154 1317 Purpureocillium takamizusanense Glutamine synthetase (GLN1), mRNA blastn 3097 143 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Ophiocordycipitaceae Purpureocillium Purpureocillium takamizusanense
23311730 23311730 PRJNA1253303_P_NODE_7019_length_247_cov_0.885057_g6997_i0 PRJNA1253303 7019 247 0.885057 2.18609079 Cokeromyces recurvatus 90255 Fungi Fungi 180 9.82e-41   NTclustered gi|2324081559|ref|XM_051528697.1| 90255 g6997 i0 81.092 85.1821862348178 238 33 94 12 1 232 1113 1344 Cokeromyces recurvatus ATP synthase subunit beta (BX663DRAFT_517217), mRNA blastn 21040 180 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Cokeromyces Cokeromyces recurvatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;