RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1249535 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9283702 9283702 PRJNA1249535_S_NODE_132688_length_347_cov_2.076642_g129305_i0 PRJNA1249535 132688 347 2.076642 7.20594774 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 544 4.45e-150   NTclustered gi|338182594|gb|JF983102.1| 156588 g129305 i0 96.914 95.2939481268012 324 10 93 0 1 324 198 521 Uncultured Verrucomicrobia bacterium clone Upland_75_2390 16S ribosomal RNA gene, partial sequence blastn 33067 544 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
18207835 18207835 PRJNA1249535_S_NODE_180915_length_317_cov_1.303279_g177532_i0 PRJNA1249535 180915 317 1.303279 4.13139443 Candidatus Methylacidiphilum infernorum 511746 Bacteria Bacteria 56.5 0.002   NTclustered gi|1999105499|gb|CP065956.1| 511746 g177532 i0 94.595 0.116719242902208 37 0 12 2 58 94 617559 617593 Candidatus Methylacidiphilum infernorum strain IT5 chromosome, complete genome blastn 37 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales Methylacidiphilaceae Methylacidiphilum (ex Ratnadevi et al. 2023) Candidatus Methylacidiphilum infernorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;