RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249535 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5458422 5458422 PRJNA1249535_S_NODE_105305_length_369_cov_5.695946_g101922_i0 PRJNA1249535 105305 369 5.695946 21.01804074 Maridesulfovibrio sp. 2795000 Bacteria Bacteria 52.8 0.035   NTclustered gi|2907625966|emb|OZ223526.1| 2795000 g101922 i0 96.875 0.0867208672086721 32 0 9 1 316 347 1781707 1781677 MAG: Maridesulfovibrio sp. isolate 4b7aa1d1-4656-4508-adef-fef75badb664 genome assembly, chromosome: 1 blastn 32 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Maridesulfovibrio Maridesulfovibrio sp.
8011878 8011878 PRJNA1249535_S_NODE_5067_length_1045_cov_4.440329_g3528_i0 PRJNA1249535 5067 1045 4.440329 46.40143805 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 54.7 0.03   NTclustered gi|2621703259|emb|OY762430.1| 3065857 g3528 i0 100 0.0277511961722488 29 0 3 0 273 301 1219077 1219049 MAG: Geopsychrobacteraceae bacterium isolate 31ebb314-3b6f-4c34-9fd3-1c731cc0fcc3 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;