RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1249535 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6734798 6734798 PRJNA1249535_S_NODE_251366_length_279_cov_3.024272_g247983_i0 PRJNA1249535 251366 279 3.024272 8.43771888 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|325187216|emb|FR824178.1| 890382 g247983 i0 100 0.100358422939068 28 0 10 0 119 146 28372 28345 Albugo laibachii Nc14, genomic contig CONTIG_133_NC14_v4_68809_223 blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
6736040 6736040 PRJNA1249535_S_NODE_44386_length_500_cov_2.604215_g41057_i0 PRJNA1249535 44386 500 2.604215 13.021075 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.049   NTclustered gi|325187216|emb|FR824178.1| 890382 g41057 i0 100 0.056 28 0 6 0 153 180 28372 28345 Albugo laibachii Nc14, genomic contig CONTIG_133_NC14_v4_68809_223 blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7430415 7430415 PRJNA1249535_S_NODE_80726_length_400_cov_4.198777_g77345_i0 PRJNA1249535 80726 400 4.198777 16.795108 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.038   NTclustered gi|325182251|emb|FR824070.1| 890382 g77345 i0 96.875 0.16 32 0 8 1 143 174 112267 112237 Albugo laibachii Nc14, genomic contig CONTIG_25_NC14_v4_162253_173 blastn 64 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14385291 14385291 PRJNA1249535_S_NODE_187432_length_313_cov_3.158333_g184049_i0 PRJNA1249535 187432 313 3.158333 9.88558229 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 58.4 6.29e-4   NTclustered gi|675174426|ref|XM_008897850.1| 761204 g184049 i0 100 0.389776357827476 31 0 10 0 283 313 1022 992 Phytophthora parasitica INRA-310 hypothetical protein, variant 2 mRNA blastn 122 58.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;