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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 26 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1249535 · 26 ✖

analysis 1

  • blastn · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
357143 357143 PRJNA1249535_S_NODE_270501_length_269_cov_1.852041_g267118_i0 PRJNA1249535 270501 269 1.852041 4.98199029 Strongyloides papillosus 174720 Nematoda Nematoda 56.5 0.002   NTclustered gi|690018663|emb|LM525959.1| 174720 g267118 i0 94.444 0.505576208178439 36 2 13 0 210 245 19923 19888 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000077 blastn 136 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
357578 357578 PRJNA1249535_S_NODE_307101_length_249_cov_1.892045_g303718_i0 PRJNA1249535 307101 249 1.892045 4.71119205 Rotylenchulus reniformis 239373 Nematoda Nematoda 60.2 1.35e-4   NTclustered gi|264665173|gb|FJ906460.1| 239373 g303718 i0 97.143 1.06827309236948 35 1 14 0 175 209 117 151 Rotylenchulus reniformis clone 376 microsatellite sequence blastn 266 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Hoplolaimidae Rotylenchulus Rotylenchulus reniformis
1633034 1633034 PRJNA1249535_S_NODE_39862_length_520_cov_3.892617_g36552_i0 PRJNA1249535 39862 520 3.892617 20.2416084 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 0.001   NTclustered gi|687022652|emb|LM525566.1| 174720 g36552 i0 94.737 0.0730769230769231 38 1 7 1 310 346 355641 355604 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000003 blastn 38 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2907986 2907986 PRJNA1249535_S_NODE_269123_length_269_cov_7.224490_g265740_i0 PRJNA1249535 269123 269 7.22449 19.4338781 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.007   NTclustered gi|351063305|emb|FO081415.1| 6239 g265740 i0 100 0.215613382899628 29 0 11 0 21 49 29699 29671 Caenorhabditis elegans YAC Y92H12A, complete sequence blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2908407 2908407 PRJNA1249535_S_NODE_305163_length_250_cov_1.762712_g301780_i0 PRJNA1249535 305163 250 1.762712 4.40678 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.006   NTclustered gi|687022682|emb|LM525596.1| 174720 g301780 i0 100 0.116 29 0 12 0 29 57 138371 138343 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000029 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
2909281 2909281 PRJNA1249535_S_NODE_57903_length_452_cov_3.459103_g54538_i0 PRJNA1249535 57903 452 3.459103 15.63514556 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.012   NTclustered gi|690018727|emb|LM526023.1| 174720 g54538 i0 100 0.0641592920353982 29 0 6 0 412 440 6343 6315 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000081 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
6732796 6732796 PRJNA1249535_S_NODE_103986_length_371_cov_1.741611_g100603_i0 PRJNA1249535 103986 371 1.741611 6.46137681 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.035   NTclustered gi|687022745|emb|LM525659.1| 174720 g100603 i0 100 0.0754716981132075 28 0 8 0 96 123 17029 17002 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000062 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
8010224 8010224 PRJNA1249535_S_NODE_231587_length_289_cov_9.041667_g228204_i0 PRJNA1249535 231587 289 9.041667 26.13041763 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.007   NTclustered gi|690019180|emb|LM526472.1| 174720 g228204 i0 96.875 0.110726643598616 32 1 11 0 162 193 6078 6109 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000815 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
8011004 8011004 PRJNA1249535_S_NODE_29427_length_577_cov_11.001984_g26198_i0 PRJNA1249535 29427 577 11.001984 63.48144768 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.016   NTclustered gi|1376157371|ref|XM_024646132.1| 34506 g26198 i0 100 0.0502599653379549 29 0 5 0 279 307 640 668 Strongyloides ratti Protein of unknown function DUF273 family-containing protein (SRAE_0000026500), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
9285554 9285554 PRJNA1249535_S_NODE_276548_length_265_cov_5.875000_g273165_i0 PRJNA1249535 276548 265 5.875 15.56875 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.007   NTclustered gi|687865919|emb|LK927926.1| 6239 g273165 i0 96.97 0.249056603773585 33 0 12 1 37 68 8162 8194 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000341 blastn 66 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9285948 9285948 PRJNA1249535_S_NODE_310248_length_247_cov_3.609195_g306865_i0 PRJNA1249535 310248 247 3.609195 8.91471165 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.022   NTclustered gi|687865752|emb|LK927696.1| 6239 g306865 i0 100 0.226720647773279 28 0 11 0 166 193 112670 112697 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000146 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9980510 9980510 PRJNA1249535_S_NODE_332068_length_232_cov_3.138365_g328685_i0 PRJNA1249535 332068 232 3.138365 7.2810068 Metazoa 33208 Nematoda Nematoda 65.8 2.66e-6   NTclustered gi|1003466885|gb|KU180693.1| 6248 g328685 i0 95.122 14.8620689655172 41 2 18 0 167 207 2371 2331 Strongyloides stercoralis 28S ribosomal RNA gene, partial sequence blastn 3448 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis
10559675 10559675 PRJNA1249535_S_NODE_142749_length_340_cov_2.337079_g139366_i0 PRJNA1249535 142749 340 2.337079 7.9460686 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.009   NTclustered gi|687865298|emb|LK927539.1| 6239 g139366 i0 94.444 0.211764705882353 36 1 11 1 221 256 318647 318681 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000010 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11833998 11833998 PRJNA1249535_S_NODE_126170_length_351_cov_9.611511_g122787_i0 PRJNA1249535 126170 351 9.611511 33.736403610000004 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 7.13e-4   NTclustered gi|687865720|emb|LK927684.1| 6239 g122787 i0 92.5 0.227920227920228 40 3 11 0 17 56 60373 60412 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000135 blastn 80 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13108912 13108912 PRJNA1249535_S_NODE_10351_length_822_cov_5.986649_g5244_i1 PRJNA1249535 10351 822 5.986649 49.21025478 Loa loa 7209 Nematoda Nematoda 58.4 0.002   NTclustered gi|1158600395|ref|XM_020450831.1| 7209 g5244 i1 94.595 0.510948905109489 37 2 5 0 747 783 265 301 Loa loa hypothetical protein partial mRNA blastn 420 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
13112819 13112819 PRJNA1249535_S_NODE_80291_length_401_cov_2.585366_g76910_i0 PRJNA1249535 80291 401 2.585366 10.36731766 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.011   NTclustered gi|1557394408|emb|LR031564.1| 45931 g76910 i0 100 0.0723192019950125 29 0 7 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14386774 14386774 PRJNA1249535_S_NODE_3072_length_1231_cov_7.496546_g2003_i0 PRJNA1249535 3072 1231 7.496546 92.28248126 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.035   NTclustered gi|687866685|emb|LK928449.1| 6239 g2003 i0 96.875 0.0519902518277823 32 1 3 0 565 596 19786 19817 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000685 blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15080073 15080073 PRJNA1249535_S_NODE_252972_length_278_cov_3.551220_g249589_i0 PRJNA1249535 252972 278 3.55122 9.8723916 Metazoa 33208 Nematoda Nematoda 56.5 0.002   NTclustered gi|412979467|emb|FO080591.2| 6239 g249589 i0 100 2.44604316546763 30 0 11 0 1 30 22142 22113 Caenorhabditis elegans Cosmid F02E11, complete sequence blastn 680 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
15661522 15661522 PRJNA1249535_S_NODE_60973_length_443_cov_3.286486_g57603_i0 PRJNA1249535 60973 443 3.286486 14.55913298 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.012   NTclustered gi|690018525|emb|LM525763.1| 174720 g57603 i0 100 0.0654627539503386 29 0 7 0 295 323 33983 33955 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000153 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
16933340 16933340 PRJNA1249535_S_NODE_182414_length_316_cov_2.148148_g179031_i0 PRJNA1249535 182414 316 2.148148 6.78814768 Caenorhabditis briggsae 6238 Nematoda Nematoda 54.7 0.008   NTclustered gi|268554835|ref|XM_002635360.1| 6238 g179031 i0 96.875 0.10126582278481 32 1 10 0 281 312 102 133 Caenorhabditis briggsae Protein CBG00802 (CBG00802), partial mRNA blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
19481899 19481899 PRJNA1249535_S_NODE_158596_length_330_cov_1.684825_g155213_i0 PRJNA1249535 158596 330 1.684825 5.5599225 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.031   NTclustered gi|687865814|emb|LK928007.1| 6239 g155213 i0 100 0.16969696969697 28 0 8 0 167 194 48336 48309 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000075 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19483068 19483068 PRJNA1249535_S_NODE_249476_length_280_cov_3.043478_g246093_i0 PRJNA1249535 249476 280 3.043478 8.5217384 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.002   NTclustered gi|2791366|emb|AL021180.1| 6239 g246093 i0 92.5 0.571428571428571 40 1 14 2 206 243 1388 1349 Caenorhabditis elegans YAC Y44F5A, complete sequence blastn 160 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22032712 22032712 PRJNA1249535_S_NODE_166918_length_325_cov_1.400794_g163535_i0 PRJNA1249535 166918 325 1.400794 4.5525805 Onchocerca volvulus 6282 Nematoda Nematoda 52.8 0.031   NTclustered gi|62422147|gb|AY884214.1| 6282 g163535 i0 100 0.0861538461538462 28 0 9 0 228 255 1574 1547 Onchocerca volvulus P-glycoprotein gene, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca volvulus
23308654 23308654 PRJNA1249535_S_NODE_194659_length_309_cov_2.995763_g191276_i0 PRJNA1249535 194659 309 2.995763 9.25690767 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.008   NTclustered gi|687866488|emb|LK928703.1| 6239 g191276 i0 96.875 0.310679611650485 32 1 10 0 133 164 4508 4539 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000357 blastn 96 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23309287 23309287 PRJNA1249535_S_NODE_246879_length_281_cov_5.072115_g243496_i0 PRJNA1249535 246879 281 5.072115 14.25264315 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.007   NTclustered gi|687866488|emb|LK928703.1| 6239 g243496 i0 94.444 0.384341637010676 36 1 12 1 168 202 4539 4504 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000357 blastn 108 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24582991 24582991 PRJNA1249535_S_NODE_220880_length_295_cov_3.342342_g217497_i0 PRJNA1249535 220880 295 3.342342 9.8599089 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.027   NTclustered gi|687022756|emb|LM525670.1| 174720 g217497 i0 100 0.0949152542372881 28 0 9 0 197 224 3395 3422 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000069 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;