RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249535 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
357026 357026 PRJNA1249535_S_NODE_260301_length_274_cov_3.815920_g256918_i0 PRJNA1249535 260301 274 3.81592 10.4556208 Sulfidibacter corallicola 2818388 Bacteria Bacteria 54.7 0.007   NTclustered gi|2013124720|gb|CP071793.1| 2818388 g256918 i0 100 0.105839416058394 29 0 11 0 226 254 534362 534390 Sulfidibacter corallicola strain M133 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Acanthopleuribacterales Acanthopleuribacteraceae Sulfidibacter Sulfidibacter corallicola
15660073 15660073 PRJNA1249535_S_NODE_263753_length_272_cov_4.477387_g260370_i0 PRJNA1249535 263753 272 4.477387 12.17849264 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 52.8 0.025   NTclustered gi|2874253980|emb|OY970305.1| 194844 g260370 i0 100 0.102941176470588 28 0 10 0 33 60 1766496 1766523 MAG: uncultured Acidobacteriaceae bacterium isolate MFD03726.bin.c.10 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;