RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 5 ✖

bioproject 1

  • PRJNA1249535 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1632263 1632263 PRJNA1249535_S_NODE_288942_length_259_cov_1.258065_g285559_i0 PRJNA1249535 288942 259 1.258065 3.25838835 Saccharolobus caldissimus 1702097 Archaea Archaea 52.8 0.024   NTclustered gi|2129441369|dbj|AP025226.1| 1702097 g285559 i0 100 0.108108108108108 28 0 11 0 230 257 2501173 2501146 Saccharolobus caldissimus JCM32116 DNA, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus caldissimus
5461382 5461382 PRJNA1249535_S_NODE_338885_length_224_cov_4.231788_g335502_i0 PRJNA1249535 338885 224 4.231788 9.47920512 Nitrosopumilus adriaticus 1580092 Archaea Archaea 52.8 0.02   NTclustered gi|2790751567|gb|CP167059.1| 1580092 g335502 i0 96.774 0.138392857142857 31 1 14 0 178 208 852804 852834 Nitrosopumilus adriaticus strain CCS1 chromosome blastn 31 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus adriaticus
8011535 8011535 PRJNA1249535_S_NODE_344667_length_203_cov_16.684615_g341284_i0 PRJNA1249535 344667 203 16.684615 33.86976845 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.018   NTclustered gi|323706731|gb|CP002529.1| 985053 g341284 i0 100 0.137931034482759 28 0 14 0 154 181 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
18209359 18209359 PRJNA1249535_S_NODE_306395_length_249_cov_3.284091_g303012_i0 PRJNA1249535 306395 249 3.284091 8.17738659 Candidatus Nitrosomarinus catalinensis 1898749 Archaea Archaea 52.8 0.023   NTclustered gi|1196088602|gb|CP021324.1| 1898749 g303012 i0 100 0.112449799196787 28 0 11 0 211 238 25199 25226 Candidatus Nitrosomarinus catalina strain SPOT01 chromosome, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalinensis
19485315 19485315 PRJNA1249535_S_NODE_99536_length_375_cov_5.059603_g96153_i0 PRJNA1249535 99536 375 5.059603 18.97351125 Candidatus Nitrosocosmicus franklandianus 1798806 Archaea Archaea 52.8 0.036   NTclustered gi|1599533355|emb|LR216287.1| 1798806 g96153 i0 94.286 0.0933333333333333 35 0 9 2 215 247 1065496 1065462 Candidatus Nitrosocosmicus franklandus isolate NFRAN1 genome assembly, chromosome: NFRAN blastn 35 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus franklandianus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;