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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 16 ✖

bioproject 1

  • PRJNA1249535 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1052446 1052446 PRJNA1249535_S_NODE_157581_length_330_cov_4.435798_g154198_i0 PRJNA1249535 157581 330 4.435798 14.6381334 Fusobacterium 848 Bacteria Bacteria 54.7 0.009   NTclustered gi|2705042081|gb|CP085192.1| 856 g154198 i0 100 0.351515151515152 29 0 9 0 200 228 1493364 1493336 Fusobacterium varium strain SB069 chromosome blastn 116 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
1633391 1633391 PRJNA1249535_S_NODE_57602_length_453_cov_3.294737_g54239_i0 PRJNA1249535 57602 453 3.294737 14.92515861 Fusobacterium canifelinum 285729 Bacteria Bacteria 52.8 0.044   NTclustered gi|1948622963|gb|CP066022.1| 285729 g54239 i0 90 0.176600441501104 40 4 9 0 390 429 1502390 1502429 Fusobacterium canifelinum strain FDAARGOS_999 chromosome, complete genome blastn 80 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium canifelinum
4184284 4184284 PRJNA1249535_S_NODE_257904_length_275_cov_11.336634_g254521_i0 PRJNA1249535 257904 275 11.336634 31.1757435 Sneathia sanguinegens 40543 Bacteria Bacteria 58.4 5.43e-4   NTclustered gi|2769805188|gb|CP160095.1| 40543 g254521 i0 97.059 0.123636363636364 34 1 12 0 158 191 1025359 1025392 Sneathia sanguinegens strain CCUG 41628T chromosome, complete genome blastn 34 58.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sneathia Sneathia sanguinegens
4880497 4880497 PRJNA1249535_S_NODE_207884_length_302_cov_2.668122_g204501_i0 PRJNA1249535 207884 302 2.668122 8.05772844 Bacteria 2 Bacteria Bacteria 231 3.36e-56   NTclustered gi|922689899|gb|CP012410.1| 712357 g204501 i0 81.25 238.026490066225 304 42 98 14 1 297 53483 53188 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 71884 231 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
4880513 4880513 PRJNA1249535_S_NODE_245704_length_282_cov_2.937799_g242321_i0 PRJNA1249535 245704 282 2.937799 8.28459318 Fusobacterium 848 Bacteria Bacteria 56.5 0.002   NTclustered gi|2573686249|gb|CP133474.1| 851 g242321 i0 94.595 3.02836879432624 37 1 13 1 218 253 1844764 1844728 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 854 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
6155245 6155245 PRJNA1249535_S_NODE_80325_length_401_cov_2.295732_g76944_i0 PRJNA1249535 80325 401 2.295732 9.20588532 Fusobacterium 848 Bacteria Bacteria 54.7 0.011   NTclustered gi|2645859777|gb|CP141277.1| 76857 g76944 i0 100 0.144638403990025 29 0 7 0 265 293 1550347 1550375 Fusobacterium polymorphum strain C48P chromosome, complete genome blastn 58 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
9285029 9285029 PRJNA1249535_S_NODE_23168_length_627_cov_5.492780_g20024_i0 PRJNA1249535 23168 627 5.49278 34.4397306 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 54.7 0.017   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g20024 i0 100 0.0462519936204147 29 0 5 0 33 61 2111554 2111526 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 29 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
13111247 13111247 PRJNA1249535_S_NODE_281471_length_263_cov_1.863158_g278088_i0 PRJNA1249535 281471 263 1.863158 4.90010554 Leptotrichia alba 3239304 Bacteria Bacteria 52.8 0.024   NTclustered gi|2785244533|gb|CP165647.1| 3239304 g278088 i0 100 0.106463878326996 28 0 11 0 115 142 2422996 2422969 Leptotrichia sp. HSP-536 chromosome, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia alba
13805900 13805900 PRJNA1249535_S_NODE_306551_length_249_cov_2.897727_g303168_i0 PRJNA1249535 306551 249 2.897727 7.21534023 Fusobacterium 848 Bacteria Bacteria 52.8 0.023   NTclustered gi|2446175567|gb|CP117964.1| 851 g303168 i0 100 2.36144578313253 28 0 11 0 32 59 1071262 1071289 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 588 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
14386630 14386630 PRJNA1249535_S_NODE_29452_length_577_cov_7.208333_g26222_i0 PRJNA1249535 29452 577 7.208333 41.59208141 Fusobacterium hwasookii 1583098 Bacteria Bacteria 58.4 0.001   NTclustered gi|958162200|gb|CP013331.1| 1307442 g26222 i0 100 0.0537261698440208 31 0 5 0 179 209 1020271 1020241 Fusobacterium hwasookii ChDC F174, complete genome blastn 31 58.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
15080025 15080025 PRJNA1249535_S_NODE_110032_length_365_cov_3.140411_g106649_i0 PRJNA1249535 110032 365 3.140411 11.46250015 Fusobacterium 848 Bacteria Bacteria 56.5 0.003   NTclustered gi|2573686249|gb|CP133474.1| 851 g106649 i0 100 0.493150684931507 30 0 8 0 137 166 907761 907732 Fusobacterium nucleatum strain LMG 13131 chromosome, complete genome blastn 180 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
16354856 16354856 PRJNA1249535_S_NODE_220053_length_295_cov_7.085586_g216670_i0 PRJNA1249535 220053 295 7.085586 20.9024787 Leptotrichia 32067 Bacteria Bacteria 52.8 0.027   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g216670 i0 100 0.379661016949153 28 0 9 0 116 143 195717 195744 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 112 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
16354886 16354886 PRJNA1249535_S_NODE_57353_length_454_cov_1.790026_g53990_i0 PRJNA1249535 57353 454 1.790026 8.12671804 Leptotrichia 32067 Bacteria Bacteria 54.7 0.012   NTclustered gi|1227268105|gb|CP016753.1| 712368 g53990 i0 100 0.127753303964758 29 0 6 0 137 165 2127868 2127840 Leptotrichia sp. oral taxon 498, complete genome blastn 58 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 498
18207232 18207232 PRJNA1249535_S_NODE_135995_length_344_cov_6.416974_g132612_i0 PRJNA1249535 135995 344 6.416974 22.07439056 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 52.8 0.033   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g132612 i0 100 0.0813953488372093 28 0 8 0 100 127 1459855 1459828 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
21454278 21454278 PRJNA1249535_S_NODE_188917_length_312_cov_3.786611_g185534_i0 PRJNA1249535 188917 312 3.786611 11.81422632 Fusobacterium 848 Bacteria Bacteria 52.8 0.029   NTclustered gi|1208657894|gb|CP021934.1| 76857 g185534 i0 100 0.628205128205128 28 0 9 0 254 281 1727301 1727328 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 196 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
25278554 25278554 PRJNA1249535_S_NODE_193120_length_310_cov_2.375527_g189737_i0 PRJNA1249535 193120 310 2.375527 7.3641337 Fusobacterium 848 Bacteria Bacteria 54.7 0.008   NTclustered gi|1519065922|gb|CP033837.1| 859 g189737 i0 100 0.187096774193548 29 0 9 0 281 309 187078 187050 Fusobacterium necrophorum strain FDAARGOS_565 chromosome, complete genome blastn 58 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;