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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA1249535 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
356545 356545 PRJNA1249535_S_NODE_223701_length_294_cov_1.411765_g220318_i0 PRJNA1249535 223701 294 1.411765 4.1505891 Chloroidium sp. KL-2023a 3031248 Plants Plants 403 6.5399999999999995e-108   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g220318 i0 95.968 96.1598639455782 248 10 97 0 3 250 248 1 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 28271 403 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a
2907387 2907387 PRJNA1249535_S_NODE_219583_length_296_cov_2.008969_g216200_i0 PRJNA1249535 219583 296 2.008969 5.94654824 Pectinodesmus pectinatus 91197 Plants Plants 52.8 0.027   NTclustered gi|1331211341|ref|NC_036668.1| 91197 g216200 i0 100 0.0945945945945946 28 0 9 0 4 31 35920 35893 Pectinodesmus pectinatus chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Pectinodesmus Pectinodesmus pectinatus
2907829 2907829 PRJNA1249535_S_NODE_256683_length_276_cov_3.566502_g253300_i0 PRJNA1249535 256683 276 3.566502 9.84354552 Cephaleuros karstenii 1985640 Plants Plants 54.7 0.007   NTclustered gi|2192923902|ref|NC_060534.1| 1985640 g253300 i0 100 0.206521739130435 29 0 11 0 1 29 2090 2062 Cephaleuros karstenii strain GD1942 chloroplast, complete genome blastn 57 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros karstenii
8011541 8011541 PRJNA1249535_S_NODE_34547_length_547_cov_4.635021_g31269_i0 PRJNA1249535 34547 547 4.635021 25.35356487 Cephaleuros diffusus 1519597 Plants Plants 56.5 0.004   NTclustered gi|2692956661|ref|NC_086864.1| 1519597 g31269 i0 96.97 0.0603290676416819 33 1 6 0 334 366 147036 147068 Cephaleuros diffusus chloroplast, complete genome blastn 33 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros diffusus
14384529 14384529 PRJNA1249535_S_NODE_131672_length_347_cov_6.489051_g128289_i0 PRJNA1249535 131672 347 6.489051 22.51700697 Cephaleuros karstenii 1985640 Plants Plants 52.8 0.033   NTclustered gi|2192923902|ref|NC_060534.1| 1985640 g128289 i0 100 0.0806916426512968 28 0 8 0 121 148 143934 143961 Cephaleuros karstenii strain GD1942 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros karstenii
15661155 15661155 PRJNA1249535_S_NODE_43433_length_503_cov_27.672093_g40105_i0 PRJNA1249535 43433 503 27.672093 139.19062779 Hydrodictyon reticulatum 3107 Plants Plants 54.7 0.014   NTclustered gi|1197510262|ref|NC_034655.1| 3107 g40105 i0 90.476 0.0834990059642147 42 2 8 1 80 119 11454 11495 Hydrodictyon reticulatum voucher HAM0289 chloroplast, complete genome blastn 42 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum
21454316 21454316 PRJNA1249535_S_NODE_297357_length_254_cov_2.337017_g293974_i0 PRJNA1249535 297357 254 2.337017 5.93602318 Stichococcaceae 2910630 Plants Plants 453 5.41e-123   NTclustered gi|728042166|gb|KM438447.1| 358140 g293974 i0 98.819 99.8779527559055 254 3 100 0 1 254 517 264 Stichococcus jenerensis isolate CAUP J 1302 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, partial cds; chloroplast blastn 25369 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Tetratostichococcus Tetratostichococcus jenerensis
24582730 24582730 PRJNA1249535_S_NODE_200560_length_306_cov_2.334764_g197177_i0 PRJNA1249535 200560 306 2.334764 7.14437784 Sykidion marinum 44573 Plants Plants 52.8 0.029   NTclustered gi|1197510977|ref|NC_034710.1| 44573 g197177 i0 100 0.0915032679738562 28 0 9 0 224 251 6491 6464 Pseudoneochloris marina culture UTEX:1445 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Sykidiales Sykidiacaeae Sykidion Sykidion marinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;