RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1249535 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
355276 355276 PRJNA1249535_S_NODE_128281_length_350_cov_3.050542_g124898_i0 PRJNA1249535 128281 350 3.050542 10.676897 Methanosphaera stadtmanae 2317 Archaea Archaea 52.8 0.033   NTclustered gi|1721134173|emb|LR698975.1| 2317 g124898 i0 100 0.24 28 0 8 0 322 349 159729 159702 Methanosphaera stadtmanae isolate MGYG-HGUT-02164 genome assembly, chromosome: 1 blastn 84 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
8012074 8012074 PRJNA1249535_S_NODE_59727_length_446_cov_7.222520_g56358_i0 PRJNA1249535 59727 446 7.22252 32.2124392 Methanocaldococcus vulcanius 73913 Archaea Archaea 54.7 0.012   NTclustered gi|261369124|gb|CP001787.1| 579137 g56358 i0 100 0.0650224215246637 29 0 7 0 154 182 1546970 1546942 Methanocaldococcus vulcanius M7, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus vulcanius
16933579 16933579 PRJNA1249535_S_NODE_200154_length_306_cov_3.111588_g196771_i0 PRJNA1249535 200154 306 3.111588 9.52145928 Methanotorris igneus 2189 Archaea Archaea 52.8 0.029   NTclustered gi|333750483|gb|CP002737.1| 880724 g196771 i0 100 0.0915032679738562 28 0 9 0 67 94 230316 230343 Methanotorris igneus Kol 5, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus
24582523 24582523 PRJNA1249535_S_NODE_184360_length_315_cov_1.780992_g180977_i0 PRJNA1249535 184360 315 1.780992 5.6101248 Methanosphaera sp. ISO3-F5 1452353 Archaea Archaea 52.8 0.029   NTclustered gi|2695672541|gb|CP118754.2| 1452353 g180977 i0 100 0.0888888888888889 28 0 9 0 119 146 141740 141713 Methanosphaera sp. ISO3-F5 plasmid pNP174, complete sequence blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. ISO3-F5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;