RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1249535" and tax_clade = "Metamonada"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA1249535 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
355435 355435 PRJNA1249535_S_NODE_138821_length_342_cov_6.260223_g135438_i0 PRJNA1249535 138821 342 6.260223 21.40996266 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.032   NTclustered gi|2319603644|ref|XM_001305270.2| 412133 g135438 i0 100 0.0818713450292398 28 0 8 0 202 229 2425 2452 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0659660), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
19483732 19483732 PRJNA1249535_S_NODE_3056_length_1233_cov_4.143103_g1992_i0 PRJNA1249535 3056 1233 4.143103 51.08445999 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.035   NTclustered gi|154420903|ref|XM_001583416.1| 412133 g1992 i0 100 0.0235198702351987 29 0 2 0 980 1008 1085 1113 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0811060), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22032330 22032330 PRJNA1249535_S_NODE_14018_length_741_cov_7.500000_g11298_i0 PRJNA1249535 14018 741 7.5 55.575 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.2 4.44e-4   NTclustered gi|2806478989|ref|XM_068510792.1| 1144522 g11298 i0 94.872 0.0526315789473684 39 0 5 2 293 331 3329 3365 Tritrichomonas foetus uncharacterized protein (TRFO_36368), partial mRNA blastn 39 60.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
22034427 22034427 PRJNA1249535_S_NODE_312318_length_246_cov_3.156069_g308935_i0 PRJNA1249535 312318 246 3.156069 7.76392974 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 54.7 0.006   NTclustered gi|2794979663|ref|XM_067871484.1| 2049356 g308935 i0 100 0.471544715447154 29 0 12 0 146 174 330 302 Monocercomonoides exilis uncharacterized protein (MONOS_18460), partial mRNA blastn 116 54.7 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;