RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1249042" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17629993 17629993 PRJNA1249042_S_NODE_42534_length_220_cov_2.322034_g42320_i0 PRJNA1249042 42534 220 2.322034 5.1084748 Akkermansia 239934 Bacteria Bacteria 213 8.44e-51   NTclustered gi|1888387165|gb|CP058562.1| 239935 g42320 i0 84.234 298.690909090909 222 31 100 4 1 220 139100 139319 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 65712 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
24580498 24580498 PRJNA1249042_S_NODE_101920_length_160_cov_1.598291_g101706_i0 PRJNA1249042 101920 160 1.598291 2.5572656 Opitutia bacterium KCR 482 3034326 Bacteria Bacteria 291 2.5799999999999998e-74   NTclustered gi|2707273910|gb|CP149973.1| 3034326 g101706 i0 99.375 1 160 1 100 0 1 160 2274798 2274957 Opitutia bacterium KCR 482 chromosome, complete genome blastn 160 291 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium KCR 482

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;