RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1249042" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5457862 5457862 PRJNA1249042_S_NODE_38125_length_227_cov_1.788043_g37911_i0 PRJNA1249042 38125 227 1.788043 4.05885761 Treponema bryantii 163 Bacteria Bacteria 292 1.0899999999999999e-74   NTclustered gi|2581915939|dbj|AP025286.1| 163 g37911 i0 89.868 1 227 23 100 0 1 227 500893 501119 Treponema bryantii JCM 32280 DNA, complete genome blastn 227 292 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema bryantii
6732279 6732279 PRJNA1249042_S_NODE_45846_length_215_cov_3.912791_g45632_i0 PRJNA1249042 45846 215 3.912791 8.41250065 Treponema sp. 166 Bacteria Bacteria 224 3.8e-54   NTclustered gi|2189480979|gb|CP091737.1| 166 g45632 i0 93.421 32.4976744186047 152 8 87 2 41 192 1830582 1830731 MAG: Treponema sp. isolate nC27_bin.160.fa chromosome blastn 6987 224 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;