RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1249042" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4181302 4181302 PRJNA1249042_S_NODE_103424_length_159_cov_1.241379_g103210_i0 PRJNA1249042 103424 159 1.241379 1.97379261 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 124 2.75e-24   NTclustered gi|2874254062|emb|OY970386.1| 1672391 g103210 i0 82.979 95.9056603773585 141 21 87 3 1 139 1891727 1891866 MAG: uncultured Chloroflexia bacterium isolate MFD03726.bin.c.14 genome assembly, chromosome: 1 blastn 15249 124 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
15657116 15657116 PRJNA1249042_S_NODE_109833_length_154_cov_2.954955_g109619_i0 PRJNA1249042 109833 154 2.954955 4.5506307 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 156 9.359999999999999e-34   NTclustered gi|2874254132|emb|OY970217.1| 1672391 g109619 i0 88.976 116.331168831169 127 12 82 2 29 154 3522619 3522494 MAG: uncultured Chloroflexia bacterium isolate MFD05684.bin.1.130 genome assembly, chromosome: 1 blastn 17915 156 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
15657733 15657733 PRJNA1249042_S_NODE_86273_length_172_cov_2.581395_g86059_i0 PRJNA1249042 86273 172 2.581395 4.4399994 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 65.8 1.85e-6   NTclustered gi|2621704001|emb|OY762956.1| 2026734 g86059 i0 95.238 0.488372093023256 42 1 24 1 132 172 1512772 1512731 MAG: Dehalococcoidia bacterium isolate caf6cba7-c187-4a53-abc2-184ab5dfaca7 genome assembly, chromosome: 1 blastn 84 65.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
22031198 22031198 PRJNA1249042_S_NODE_3838_length_445_cov_6.783582_g3626_i0 PRJNA1249042 3838 445 6.783582 30.1869399 Roseiflexus sp. RS-1 357808 Bacteria Bacteria 366 1.3499999999999996e-96   NTclustered gi|470481958|ref|NR_076505.1| 357808 g3626 i0 82.529 139.955056179775 435 58 96 18 18 445 1281 858 Roseiflexus sp. RS-1 strain RS-1 23S ribosomal RNA, complete sequence blastn 62280 366 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
22031448 22031448 PRJNA1249042_S_NODE_66018_length_191_cov_4.486486_g65804_i0 PRJNA1249042 66018 191 4.486486 8.56918826 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 196 7.17e-46   NTclustered gi|2893356046|emb|OZ220469.1| 3069543 g65804 i0 85.417 227.03664921466 192 25 100 3 1 191 2202982 2202793 MAG: Phototrophicaceae bacterium isolate 149760b3-584d-4ebc-81cd-1236e649b30c genome assembly, chromosome: 1 blastn 43364 196 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium
24581033 24581033 PRJNA1249042_S_NODE_6220_length_356_cov_2.469649_g6006_i0 PRJNA1249042 6220 356 2.469649 8.79195044 Candidatus Chlorohelix allophototropha 3003348 Bacteria Bacteria 388 2.26e-103   NTclustered gi|2530750984|gb|CP128400.1| 3003348 g6006 i0 86.723 866.634831460674 354 41 100 5 4 356 320832 320484 Candidatus Chlorohelix allophototropha isolate L227-S17 chromosome 2, complete sequence blastn 308522 388 1 Bacteria   Bacillati Chloroflexota Chloroflexia Candidatus Chloroheliales Candidatus Chloroheliaceae Candidatus Chlorohelix Candidatus Chlorohelix allophototropha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;