RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1249042" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1249042 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11833277 11833277 PRJNA1249042_S_NODE_66710_length_191_cov_1.472973_g66496_i0 PRJNA1249042 66710 191 1.472973 2.81337843 Halarcobacter ebronensis 1462615 Bacteria Bacteria 73.1 1.26e-8   NTclustered gi|1847334501|gb|CP053836.1| 1462615 g66496 i0 97.619 0.879581151832461 42 1 22 0 63 104 2224340 2224381 Halarcobacter ebronensis strain LMG 27922 chromosome, complete genome blastn 168 73.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter ebronensis
17629981 17629981 PRJNA1249042_S_NODE_38674_length_226_cov_2.054645_g38460_i0 PRJNA1249042 38674 226 2.054645 4.6434977 Pseudomonadati 3379134 Bacteria Bacteria 418 1.7199999999999998e-112   NTclustered gi|1226876681|gb|CP022559.1| 197 g38460 i0 100 100 226 0 100 0 1 226 700925 701150 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 22600 418 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;