contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA1249042" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354576 | 354576 | PRJNA1249042_S_NODE_67321_length_190_cov_2.238095_g67107_i0 | PRJNA1249042 | 67321 | 190 | 2.238095 | 4.2523805 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 279 | 6.88e-71 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g67107 | i0 | 93.194 | 238.415789473684 | 191 | 11 | 100 | 2 | 1 | 190 | 2002496 | 2002685 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 45299 | 279 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 11255500 | 11255500 | PRJNA1249042_S_NODE_15389_length_280_cov_1.987342_g15175_i0 | PRJNA1249042 | 15389 | 280 | 1.987342 | 5.5645576 | Botrimarina | 2795782 | Bacteria | Bacteria | 484 | 2.15e-132 | NTclustered | gi|1712768844|gb|CP036350.1| | 2527962 | g15175 | i0 | 97.857 | 310.957142857143 | 280 | 6 | 100 | 0 | 1 | 280 | 4247467 | 4247188 | Planctomycetes bacterium K2D chromosome, complete genome | blastn | 87068 | 484 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetes bacterium K2D | |||||
| 13108334 | 13108334 | PRJNA1249042_S_NODE_37731_length_227_cov_3.994565_g37517_i0 | PRJNA1249042 | 37731 | 227 | 3.994565 | 9.06766255 | Humisphaera borealis | 2807512 | Bacteria | Bacteria | 231 | 2.4199999999999997e-56 | NTclustered | gi|1927742986|gb|CP063458.1| | 2807512 | g37517 | i0 | 85.526 | 50.4229074889868 | 228 | 26 | 99 | 7 | 4 | 227 | 5063116 | 5062892 | Humisphaera borealis strain M1803 chromosome, complete genome | blastn | 11446 | 231 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Tepidisphaerales | Tepidisphaeraceae | Humisphaera | Humisphaera borealis | |
| 13108786 | 13108786 | PRJNA1249042_S_NODE_96251_length_164_cov_1.942149_g96037_i0 | PRJNA1249042 | 96251 | 164 | 1.942149 | 3.18512436 | uncultured Planctomycetaceae bacterium | 100233 | Bacteria | Bacteria | 191 | 2.78e-44 | NTclustered | gi|2874254106|emb|OY970189.1| | 100233 | g96037 | i0 | 88.535 | 10.4146341463415 | 157 | 18 | 96 | 0 | 8 | 164 | 7956693 | 7956849 | MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 | blastn | 1708 | 191 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Planctomycetales | Planctomycetaceae | uncultured Planctomycetaceae bacterium | ||
| 16931904 | 16931904 | PRJNA1249042_S_NODE_62774_length_195_cov_1.585526_g62560_i0 | PRJNA1249042 | 62774 | 195 | 1.585526 | 3.0917757 | Rhabdochlamydiaceae symbiont of Dictyostelium giganteum | 3342349 | Bacteria | Bacteria | 52.8 | 0.017 | NTclustered | gi|2851290179|emb|OZ197277.1| | 3342349 | g62560 | i0 | 100 | 0.143589743589744 | 28 | 0 | 14 | 0 | 93 | 120 | 914390 | 914417 | Rhabdochlamydiaceae symbiont of Dictyostelium giganteum strain Digiganteum-PALH genome assembly, chromosome: 1 | blastn | 28 | 52.8 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Candidatus Rhabdochlamydiaceae | Rhabdochlamydiaceae symbiont of Dictyostelium giganteum | ||
| 17629993 | 17629993 | PRJNA1249042_S_NODE_42534_length_220_cov_2.322034_g42320_i0 | PRJNA1249042 | 42534 | 220 | 2.322034 | 5.1084748 | Akkermansia | 239934 | Bacteria | Bacteria | 213 | 8.44e-51 | NTclustered | gi|1888387165|gb|CP058562.1| | 239935 | g42320 | i0 | 84.234 | 298.690909090909 | 222 | 31 | 100 | 4 | 1 | 220 | 139100 | 139319 | Akkermansia muciniphila strain AK32 chromosome, complete genome | blastn | 65712 | 213 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 18206014 | 18206014 | PRJNA1249042_S_NODE_18515_length_269_cov_1.840708_g18301_i0 | PRJNA1249042 | 18515 | 269 | 1.840708 | 4.95150452 | Lacipirellula limnantheis | 2528024 | Bacteria | Bacteria | 481 | 2.65e-131 | NTclustered | gi|1712529062|gb|CP036339.1| | 2528024 | g18301 | i0 | 98.885 | 146.226765799256 | 269 | 3 | 100 | 0 | 1 | 269 | 5171549 | 5171817 | Lacipirellula limnantheis strain I41 chromosome | blastn | 39335 | 481 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Lacipirellulaceae | Lacipirellula | Lacipirellula limnantheis | |
| 24580498 | 24580498 | PRJNA1249042_S_NODE_101920_length_160_cov_1.598291_g101706_i0 | PRJNA1249042 | 101920 | 160 | 1.598291 | 2.5572656 | Opitutia bacterium KCR 482 | 3034326 | Bacteria | Bacteria | 291 | 2.5799999999999998e-74 | NTclustered | gi|2707273910|gb|CP149973.1| | 3034326 | g101706 | i0 | 99.375 | 1 | 160 | 1 | 100 | 0 | 1 | 160 | 2274798 | 2274957 | Opitutia bacterium KCR 482 chromosome, complete genome | blastn | 160 | 291 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutia bacterium KCR 482 | ||||
| 24580832 | 24580832 | PRJNA1249042_S_NODE_39180_length_225_cov_2.582418_g38966_i0 | PRJNA1249042 | 39180 | 225 | 2.582418 | 5.8104405 | Limnoglobus roseus | 2598579 | Bacteria | Bacteria | 372 | 1.35e-98 | NTclustered | gi|1733446852|gb|CP042425.1| | 2598579 | g38966 | i0 | 96.444 | 41.1822222222222 | 225 | 8 | 100 | 0 | 1 | 225 | 2956669 | 2956893 | Limnoglobus roseus strain PX52 chromosome, complete genome | blastn | 9266 | 372 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Limnoglobus | Limnoglobus roseus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;