RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1249042" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1249042 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6731984 6731984 PRJNA1249042_S_NODE_115726_length_151_cov_1.305556_g115512_i0 PRJNA1249042 115726 151 1.305556 1.97138956 Patescibacteria group bacterium 2052139 Bacteria Bacteria 117 4.31e-22   NTclustered gi|2556885218|gb|CP129471.1| 2052139 g115512 i0 82.836 2.94039735099338 134 20 89 3 7 140 69001 69131 MAG: Patescibacteria group bacterium isolate cMAG.25 chromosome, complete genome blastn 444 117 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
8007703 8007703 PRJNA1249042_S_NODE_2207_length_675_cov_3.708861_g2052_i0 PRJNA1249042 2207 675 3.708861 25.03481175 Candidatus Absconditicoccus praedator 2735562 Bacteria Bacteria 222 4.85e-53   NTclustered gi|2160621446|gb|CP054059.1| 2735562 g2052 i0 76.596 84.2918518518518 423 87 62 10 1 417 728654 728238 Candidatus Absconditicoccus praedator strain M39-6 chromosome, complete genome blastn 56897 222 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales Candidatus Absconditicoccaceae Candidatus Absconditicoccus Candidatus Absconditicoccus praedator
19480364 19480364 PRJNA1249042_S_NODE_20616_length_262_cov_4.292237_g20402_i0 PRJNA1249042 20616 262 4.292237 11.24566094 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 52.8 0.024   NTclustered gi|2621704339|emb|OY760935.1| 2044595 g20402 i0 100 0.106870229007634 28 0 11 0 2 29 808690 808663 MAG: Candidatus Gracilibacteria bacterium isolate 3c0776cb-dd52-49a3-965b-30fb91b92491 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;