RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1248471" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1248471 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4180745 4180745 PRJNA1248471_S_NODE_13124_length_189_cov_1.642857_g13024_i0 PRJNA1248471 13124 189 1.642857 3.10499973 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 108 3.41e-19   NTclustered gi|820695469|tpe|LN714488.1| 572307 g13024 i0 83.761 10.7089947089947 117 15 62 4 2 117 80571 80458 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 2024 108 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
7429917 7429917 PRJNA1248471_S_NODE_3926_length_277_cov_4.289474_g3826_i0 PRJNA1248471 3926 277 4.289474 11.88184298 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 507 4.53e-139   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g3826 i0 99.639 100 277 1 100 0 1 277 1191 915 Plasmodium berghei p23-like protein mRNA, partial cds blastn 27700 512 0.990234375 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
11832184 11832184 PRJNA1248471_S_NODE_18250_length_168_cov_0.739496_g18150_i0 PRJNA1248471 18250 168 0.739496 1.24235328 Theileria equi 5872 SAR_Eukaryotes SAR_Eukaryotes 65.8 1.81e-6   NTclustered gi|2047401816|gb|MZ327268.1| 5872 g18150 i0 93.182 2.64285714285714 44 3 26 0 1 44 178 135 Theileria equi voucher GZ-6 small subunit ribosomal RNA gene, partial sequence blastn 444 65.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria equi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;