RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1248471" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1248471 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3602513 3602513 PRJNA1248471_S_NODE_6883_length_229_cov_1.400000_g6783_i0 PRJNA1248471 6883 229 1.4 3.206 Hymenobacter 89966 Bacteria Bacteria 259 1.12e-64   NTclustered gi|1844056603|gb|CP053538.1| 2735321 g6783 i0 96.815 178.707423580786 157 2 68 3 74 229 245131 244977 Hymenobacter taeanensis strain TS19 chromosome, complete genome blastn 40924 259 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter taeanensis
5456915 5456915 PRJNA1248471_S_NODE_11345_length_198_cov_2.362416_g11245_i0 PRJNA1248471 11345 198 2.362416 4.67758368 uncultured Flexibacteraceae bacterium 239735 Bacteria Bacteria 355 1.17e-93   NTclustered gi|397738957|dbj|AB695102.1| 239735 g11245 i0 98.99 110.5 198 2 100 0 1 198 385 188 Uncultured Flexibacteraceae bacterium gene for 16S rRNA, partial sequence, clone: No. 24 blastn 21879 355 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cytophagaceae   uncultured Flexibacteraceae bacterium
15079606 15079606 PRJNA1248471_S_NODE_4872_length_256_cov_2.468599_g4772_i0 PRJNA1248471 4872 256 2.468599 6.31961344 Chryseobacterium 59732 Bacteria Bacteria 449 7.060000000000001e-122   NTclustered gi|1337009544|gb|MG871221.1| 253 g4772 i0 99.593 96.12890625 246 1 96 0 11 256 132 377 Chryseobacterium indologenes strain FC1366 16S ribosomal RNA gene, partial sequence blastn 24609 449 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes
16354450 16354450 PRJNA1248471_S_NODE_4373_length_266_cov_1.792627_g4273_i0 PRJNA1248471 4373 266 1.792627 4.76838782 Bacteroides 816 Bacteria Bacteria 486 5.629999999999999e-133   NTclustered gi|2589387328|gb|CP134821.1| 818 g4273 i0 99.625 425.827067669173 267 0 100 1 1 266 4773043 4773309 Bacteroides thetaiotaomicron strain H-2209 chromosome blastn 113270 486 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron
18205260 18205260 PRJNA1248471_S_NODE_13415_length_187_cov_2.913043_g13315_i0 PRJNA1248471 13415 187 2.913043 5.44739041 Faecalibacter sp. LW9 3103144 Bacteria Bacteria 302 1.44e-77   NTclustered gi|2639808628|gb|CP141062.1| 3103144 g13315 i0 96.216 425.20320855615 185 6 99 1 3 187 39883 39700 Faecalibacter sp. LW9 chromosome, complete genome blastn 79513 302 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Faecalibacter Faecalibacter sp. LW9
21453816 21453816 PRJNA1248471_S_NODE_16017_length_175_cov_2.603175_g15917_i0 PRJNA1248471 16017 175 2.603175 4.55555625 Saprospira 1007 Bacteria Bacteria 189 1.08e-43   NTclustered gi|2422108806|gb|CP110854.1| 1008 g15917 i0 88.961 233.84 154 16 87 1 11 163 1647305 1647152 Saprospira grandis strain WH chromosome, complete genome blastn 40922 189 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae Saprospira Saprospira grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;